Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13000 445 / 1e-150 Protein of unknown function, DUF547 (.1.2) AT1G16750 368 / 5e-121 Protein of unknown function, DUF547 (.1) AT5G47380 181 / 3e-49 Protein of unknown function, DUF547 (.1) AT5G66600 175 / 2e-47 Protein of unknown function, DUF547 (.1.2.3.4) AT2G39690 150 / 1e-39 Protein of unknown function, DUF547 (.1.2) AT2G23700 150 / 3e-38 Protein of unknown function, DUF547 (.1) AT3G18900 148 / 3e-38 unknown protein AT4G37080 147 / 1e-37 Protein of unknown function, DUF547 (.1.2.3) AT3G12540 141 / 7e-36 Protein of unknown function, DUF547 (.1) AT5G42690 139 / 2e-35 Protein of unknown function, DUF547 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039917 [exp] 1018 / 0 AT1G16750 457 / 1e-155 Protein of unknown function, DUF547 (.1) Lus10033328 [exp] 427 / 1e-142 AT3G13000 712 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10034787 [exp] 417 / 4e-138 AT3G13000 710 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10037293 [exp] 397 / 3e-131 AT3G13000 663 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10035703 [exp] 350 / 1e-107 AT1G78980 746 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10022480 [exp] 165 / 2e-43 AT5G66600 662 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10016786 [exp] 165 / 2e-43 AT5G66600 666 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10007795 [exp] 159 / 8e-41 AT5G47380 562 / 0.0 Protein of unknown function, DUF547 (.1) Lus10016114 [exp] 130 / 7e-34 AT5G60720 308 / 6e-101 Protein of unknown function, DUF547 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G216800 [exp] 660 / 0 AT3G13000 437 / 1e-147 Protein of unknown function, DUF547 (.1.2) Potri.007G003900 [exp] 432 / 1e-144 AT3G13000 654 / 0.0 Protein of unknown function, DUF547 (.1.2) Potri.007G033100 [exp] 170 / 1e-45 AT5G66600 721 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.005G130000 [exp] 167 / 2e-44 AT5G66600 664 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.001G157200 [exp] 162 / 1e-42 AT5G47380 642 / 0.0 Protein of unknown function, DUF547 (.1) Potri.004G150000 [exp] 156 / 1e-40 AT5G66600 447 / 2e-150 Protein of unknown function, DUF547 (.1.2.3.4) Potri.009G111100 [exp] 148 / 7e-38 AT5G66600 466 / 5e-158 Protein of unknown function, DUF547 (.1.2.3.4) Potri.010G202900 [exp] 144 / 8e-37 AT2G39690 493 / 9e-171 Protein of unknown function, DUF547 (.1.2) Potri.009G009500 [exp] 140 / 2e-35 AT5G60720 537 / 0.0 Protein of unknown function, DUF547 (.1) Potri.007G041100 [exp] 140 / 6e-35 AT4G37080 577 / 0.0 Protein of unknown function, DUF547 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04784 [flax] [poplar] DUF547 Protein of unknown function, DUF547
Representative CDS sequence Show only first row Show all	>Lus10027653 pacid=23151270 polypeptide=Lus10027653 locus=Lus10027653.g ID=Lus10027653.BGIv1.0 annot-version=v1.0 ATGCTTTGTTTGAAAGCAGAAGCTTTTGACGACCATGACTCCGATCTGGTAGACGGCGGAGACAAGATTGATTCAATCGCCGGCGGCGCTGATTCTCCAG GATTTGTTCTTCCCATTAGTTTGTATGATGGGGTTTTCCTTTTTGGAAGTTCCCTTCATAAGTATTTCTGGAAGATGGGTAAGGTTTCCACTCGATCCAT CTCTTCCGGGGATGCCTCTCCTTCTTGTCCACCTTCCCATTTTGAGGAAACTGATGCTCAAGAGCAGAAAAGTGAAGTTGCGCAAGATGGAGATATCTCT CTTTACAAGCACAAGCTTGAGCAAGAGGTGAAAATGCTGCAGCAGAAATTGCAACAAGAGGTTGACTTGCGCTTGGCCCTTGCAAATGCTGTGGAACATT CTAACTCATCTTCTGAATTACCCTCTCCACTTCCATATAAGGCCCAAGAGCTCTTGGATAGTATAACTATCCTCGAGGATATTGTTTCAAACCTTGAACA GAAGTCAGTTGCCTTGCAATATCAACTTAGTCAAGAGAGAAATGAGCGCCGTATCGCTGAGTATCGTCTGAAGCATTTGCCTATTTTAGCATCCTCCATG TTCGATTCTTTTCACTCTAATATACCAGAGACGATAACTAGACCTGGCAGCAGACAGAACACGGAAGGAAAGATGGAGGAGAAGCCTCCATGGTCTGACT TAGTTAATGAACCAAATAAGGATTATCTTGTTGAGAAACTATGGCACAGACCTAACCAGCTTTCAGAAGCAATGGTGTTGTGCATGAGAGATATTTTCCT TTTCTTGGCGGACTCCTCCAAAATCTCTTCTTTGAAGTCTATGGTCTCGCCGTCTACGCCTCCTCCAGGACAATTACCGAATTCCTGTCTGGCATCTTTC ACGGACTCAAATTCGTCAACAAGAAGTTCCATAGGTGACATGGAACAGGACTCTCAAGTCTCAGCAAGTTATTTCACGTTTGATCCATATGGAGTTCCTG GTAAAGTAGAATGGAATAAAGGTATTGGAGCTTACAGGAATGCAGTTGAAGTCTCTTGGTTGTCAGTTGGGAAGAAAGAGCTTGAATATGCATCTGGCGC TCTCAAACGATTCAGGTTGCTTGTGGAGCAGTTGGCTGAAGTTAACCCATCACATCTTGATTGCAATGAAAAGCTAGCATTTTGGATCAATGTATACAAT GCCTTAATAATGCATGCATTTCTGGCATACGGAGTTCCAAGGAGTGATATTAAACTATTTTCCTTAATGCAGAAGGCGGCATACACAATTGGAGGGCACT CAGTCAGCGCTGCAGATATCGAATACGCTATACTGAAGATGAAGCCATCAGCACATCGACGTCAAATATCGTTCGTTCTTTCTCTTCAAAAACTGAAAGC GGCAGATGAGCTAAAGAGTTTTTCAATTAGTCGGCGAGAGCCTCTTCTGGCTTTTGCTCTAAGCTGTGGGATGTATTCTTCACCTGCAGTTCGAATATTC AAGCCGGAGAATGTGAATGAAATACTATTTAGGTCATTGAAGGATTACGCTCAAGCATCGGTTGGGATAGGCAACAAGGGGAAGATATTGGTGCCAAAGT TGCTACATTGTTTCACCAAAGGAACAGTGGACGATTCGCAGTTGCCAGAGTGGCTGTCGGAGTTGCTGTCAGCTGAGCAAGCTAGTATGGTCAAAGAGTG TTCATCTAACCAAAAGTGGAAACTACTCGGTGCACGAAGCTTCTCTGTCTTGCCTTTTGATTCGAGGTTCCGGTTTCTCTTCCTCTTGTAG
AA sequence Show only first row Show all	>Lus10027653 pacid=23151270 polypeptide=Lus10027653 locus=Lus10027653.g ID=Lus10027653.BGIv1.0 annot-version=v1.0 MLCLKAEAFDDHDSDLVDGGDKIDSIAGGADSPGFVLPISLYDGVFLFGSSLHKYFWKMGKVSTRSISSGDASPSCPPSHFEETDAQEQKSEVAQDGDIS LYKHKLEQEVKMLQQKLQQEVDLRLALANAVEHSNSSSELPSPLPYKAQELLDSITILEDIVSNLEQKSVALQYQLSQERNERRIAEYRLKHLPILASSM FDSFHSNIPETITRPGSRQNTEGKMEEKPPWSDLVNEPNKDYLVEKLWHRPNQLSEAMVLCMRDIFLFLADSSKISSLKSMVSPSTPPPGQLPNSCLASF TDSNSSTRSSIGDMEQDSQVSASYFTFDPYGVPGKVEWNKGIGAYRNAVEVSWLSVGKKELEYASGALKRFRLLVEQLAEVNPSHLDCNEKLAFWINVYN ALIMHAFLAYGVPRSDIKLFSLMQKAAYTIGGHSVSAADIEYAILKMKPSAHRRQISFVLSLQKLKAADELKSFSISRREPLLAFALSCGMYSSPAVRIF KPENVNEILFRSLKDYAQASVGIGNKGKILVPKLLHCFTKGTVDDSQLPEWLSELLSAEQASMVKECSSNQKWKLLGARSFSVLPFDSRFRFLFLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13000			Protein of unknown function, D...		Lus10027653 [exp]	0	1
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10013788 [exp]	11.8	0.8999
AT2G28560		ATRAD51B, RAD51...	DNA repair (Rad51) family prot...		Lus10023341 [exp]	16.7	0.8776
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10042966 [exp]	17.0	0.8991
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10032467 [exp]	17.7	0.8988
AT2G14050		MCM9	minichromosome maintenance 9 (...		Lus10023780 [exp]	20.2	0.8803
AT2G20470			AGC (cAMP-dependent, cGMP-depe...		Lus10033911 [exp]	20.5	0.8953
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10002625 [exp]	25.3	0.8816
AT3G12390			Nascent polypeptide-associated...		Lus10024109 [exp]	25.8	0.8836
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10040626 [exp]	31.2	0.8982
AT5G24330		SDG34, ATXR6	SET DOMAIN PROTEIN 34, ARABIDO...		Lus10040794 [exp]	32.3	0.8561

Compare expression of checked genes

Lus10027653 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.