Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20850 532 / 0 ATRAD51 RAS associated with diabetes protein 51 (.1) AT3G22880 285 / 5e-94 ARLIM15, ATDMC1 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1) AT5G57450 84 / 6e-18 ATXRCC3, XRCC3 ARABIDOPSIS THALIANA HOMOLOG OF X-RAY REPAIR CROSS COMPLEMENTING 3 \(XRCC3\), homolog of X-ray repair cross complementing 3 (XRCC3) (.1), homolog of X-ray repair cross complementing 3 (XRCC3) (.2) AT2G45280 82 / 3e-17 ATRAD51C RAS associated with diabetes protein 51C (.1.2) AT2G28560 82 / 5e-17 ATRAD51B, RAD51B DNA repair (Rad51) family protein (.1), DNA repair (Rad51) family protein (.2), DNA repair (Rad51) family protein (.3), DNA repair (Rad51) family protein (.4) AT1G07745 46 / 2e-05 SSN1, ATRAD51D, RAD51D SUPPRESOR OF SNI1, homolog of RAD51 D (.1.2) AT1G79050 44 / 0.0001 recA DNA recombination family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039928 [exp] 655 / 0 AT5G20850 530 / 0.0 RAS associated with diabetes protein 51 (.1) Lus10039383 [exp] 263 / 2e-85 AT3G22880 585 / 0.0 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1) Lus10006625 [exp] 260 / 2e-84 AT3G22880 582 / 0.0 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1) Lus10000790 [exp] 86 / 5e-19 AT2G45280 388 / 3e-136 RAS associated with diabetes protein 51C (.1.2) Lus10023341 [exp] 72 / 1e-13 AT2G28560 468 / 2e-163 DNA repair (Rad51) family protein (.1), DNA repair (Rad51) family protein (.2), DNA repair (Rad51) family protein (.3), DNA repair (Rad51) family protein (.4) Lus10038467 [exp] 67 / 4e-12 AT2G28560 430 / 2e-151 DNA repair (Rad51) family protein (.1), DNA repair (Rad51) family protein (.2), DNA repair (Rad51) family protein (.3), DNA repair (Rad51) family protein (.4) Lus10004464 [exp] 61 / 3e-10 AT5G57450 325 / 2e-111 ARABIDOPSIS THALIANA HOMOLOG OF X-RAY REPAIR CROSS COMPLEMENTING 3 \(XRCC3\), homolog of X-ray repair cross complementing 3 (XRCC3) (.1), homolog of X-ray repair cross complementing 3 (XRCC3) (.2) Lus10015220 [exp] 57 / 1e-08 AT1G07745 273 / 6e-91 SUPPRESOR OF SNI1, homolog of RAD51 D (.1.2) Lus10026204 [exp] 43 / 0.0004 AT1G79050 642 / 0.0 recA DNA recombination family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G135200 [exp] 558 / 0 AT5G20850 622 / 0.0 RAS associated with diabetes protein 51 (.1) Potri.010G081500 [exp] 289 / 1e-95 AT3G22880 613 / 0.0 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1) Potri.008G158500 [exp] 83 / 9e-19 AT3G22880 238 / 5e-79 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1) Potri.018G093100 [exp] 73 / 3e-14 AT5G57450 312 / 1e-106 ARABIDOPSIS THALIANA HOMOLOG OF X-RAY REPAIR CROSS COMPLEMENTING 3 \(XRCC3\), homolog of X-ray repair cross complementing 3 (XRCC3) (.1), homolog of X-ray repair cross complementing 3 (XRCC3) (.2) Potri.014G068100 [exp] 72 / 5e-14 AT2G45280 398 / 2e-139 RAS associated with diabetes protein 51C (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF08423 [flax] [poplar] Rad51 Rad51
Representative CDS sequence Show only first row Show all	>Lus10027654 pacid=23151291 polypeptide=Lus10027654 locus=Lus10027654.g ID=Lus10027654.BGIv1.0 annot-version=v1.0 ATGGAAGAGGAAGTATTGTGGAGCTTGTGGTCGTTGGTTGGTGCAGTAGTTATGAACCGATCCAAAAAGAATGGTGGTGGGTGTTATGATGATGATGAAG TGCAGCAAAGAAACCAGAAGTCAGCCAATCATCAACTTGAGCAACGCGCAGAGCACGATGACATTCAACATGGCCCAATCCCCATCGAGCAGCTCCAGGA AGCAGGAATAGCTTCCATAGACGTGAAGAAGCTAAAAGATGCAGGTCTATGTACAGTTGAGTCAGTTGCATACTCCCCTAGGAAAGAACTACTTCATATT AAAGGAATCAGTGAAGCTAAAGTTGACAAAATCATTGAAGCAGGCATGGTTCTTCCTGGCCTGTTCCCTTTGGCCATCCTTTTTGGCTTTGCAATTCACA TGATTTGTGGGATGGAGACAGGATCCATTACTGAGATATATGGTGAATTTCGCTCTGGAAAGACTCAGCTGTGCCACACACTTTGTGTCACCTGCCAATT ACCATTAGATCAAGGGGGCGGTGAGGGAAAAGCGATGTACATTGATGCTGAAGGCACATTCAGGCCTCAGAGACTTCTTCAGATAGCAGACAGGTATGGA CTCAATGGTGCTGATGTCTTGGAAAATGTGGCATATGCAAGAGCATATAACACTGATCACCAGTCAAGGCTTCTGCTCGAAGCAGCTTCAATGATGGTGG AAACTAGGCATCTGATGGATTCCGGACTAGGAACTAAATTTGCACTAATGATAGTAGACAGTGCTACAGCACTATACAGAACAGATTTCTCAGGCAGGGG AGAACTGTCGGCGCGACAAATGCATCTTGCAAAGTTCCTCAGGAGCTTACAGAAGTTGGCTGATGAGTTTGGTGTAGCTGTGGTGATTACCAACCAAGTA GTTGCACAAGTGGATGGTTCTGCCTTATTTGCAGGGCCTCAAATCAAGCCTATAGGCGGTAATATCATGGCTCATGCTTCTACGACTAGACTTGCTCTTC GAAAAGGAAGAGGAGAGGAACGTATCTGTAAAGTGATAAGCTCTCCTTGTTTAGCTGAAGCAGAAGCACGCTTTCAAATTTCCCCTGAAGGAGTAATTGA TGCCAAGGACTGA
AA sequence Show only first row Show all	>Lus10027654 pacid=23151291 polypeptide=Lus10027654 locus=Lus10027654.g ID=Lus10027654.BGIv1.0 annot-version=v1.0 MEEEVLWSLWSLVGAVVMNRSKKNGGGCYDDDEVQQRNQKSANHQLEQRAEHDDIQHGPIPIEQLQEAGIASIDVKKLKDAGLCTVESVAYSPRKELLHI KGISEAKVDKIIEAGMVLPGLFPLAILFGFAIHMICGMETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYG LNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRHLMDSGLGTKFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQV VAQVDGSALFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQISPEGVIDAKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20850		ATRAD51	RAS associated with diabetes p...		Lus10027654 [exp]	0	1
AT3G63240			DNAse I-like superfamily prote...		Lus10006904 [exp]	1.4	0.9133
AT2G29570		ATPCNA2, PCNA2	A. THALIANA PROLIFERATING CELL...		Lus10001197 [exp]	2.4	0.9269
AT1G78650		POLD3	DNA-directed DNA polymerases (...		Lus10013748 [exp]	4.9	0.8837
AT4G24710			P-loop containing nucleoside t...		Lus10043321 [exp]	8.7	0.9028
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10014044 [exp]	8.7	0.8492
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10023457 [exp]	13.9	0.9091
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10023877 [exp]	16.5	0.8920
AT2G30260		U2B''	U2 small nuclear ribonucleopro...		Lus10042240 [exp]	17.6	0.8862
AT3G60660			unknown protein		Lus10010359 [exp]	18.7	0.8826
AT2G20490		NOP10, EDA27	EMBRYO SAC DEVELOPMENT ARREST ...		Lus10022910 [exp]	19.5	0.8673

Compare expression of checked genes

Lus10027654 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.