Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26450 64 / 7e-12 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G33230 49 / 7e-07 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G27870 45 / 2e-05 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039927 [exp] 301 / 2e-99 AT2G26450 598 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G051200 [exp] 100 / 3e-24 AT2G26450 634 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.006G134700 [exp] 99 / 1e-23 AT4G33230 608 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G021600 [exp] 48 / 2e-06 AT4G33230 484 / 1e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G209200 [exp] 44 / 6e-05 AT5G49180 459 / 2e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.005G022900 [exp] 42 / 0.0002 AT3G05610 593 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.013G013400 [exp] 42 / 0.0002 AT3G05610 580 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10027655 pacid=23151217 polypeptide=Lus10027655 locus=Lus10027655.g ID=Lus10027655.BGIv1.0 annot-version=v1.0 ATGGTTTTCCAAGATTTTGATCAAATCACAGAGAGGAGGAGGTTGGAGAGACAACGCCAATTCCGCAAGAAACTCATCATCGCTTCACTTGTTGCTCTTA TCTGCATCTCCCTCATCGTCGCCTGTGCTTATGCCTTCGTTGGCCAAGAAATGAAGAACAGTAAGAACAAAGATGTCGATGATCATAAAAAGGCTACAAA GACCGATGACGACGGCGATGAAAATCCCCCACAAAAACCTGCACAGTCATCGCCACAAGACGAAAAAGAAAACGGAGGTGACGATAAAAAACAGAGCAGT ACCAAAAATATATCCAACGTACAGAAAATGGTGAAACAAGTTTGCAATTCTTCAACGTATCAAACAAAGTGTCAGACAACATACGAGGATGCAATCAAGA AGAACTCATCCGTCACCGCCAACGACTTTATCAAAATATCGATCCAGGCAGTGAGCACGGAGATTCAAAATGTAATGACCAAACTCAACAGCTTGAAATT CGACGACCCGAAGGCTCAAGGAGCGTTCGAGGATTGCAAGAAGCTTATCGGTTACGCCAAAGACGAGTTAAACGACTCGATTTCGACAGCCGGTGAAAAC GACCTGATTAAAAACTTGTCAAAGAACAAAAAACTTGGCTAA
AA sequence Show only first row Show all	>Lus10027655 pacid=23151217 polypeptide=Lus10027655 locus=Lus10027655.g ID=Lus10027655.BGIv1.0 annot-version=v1.0 MVFQDFDQITERRRLERQRQFRKKLIIASLVALICISLIVACAYAFVGQEMKNSKNKDVDDHKKATKTDDDGDENPPQKPAQSSPQDEKENGGDDKKQSS TKNISNVQKMVKQVCNSSTYQTKCQTTYEDAIKKNSSVTANDFIKISIQAVSTEIQNVMTKLNSLKFDDPKAQGAFEDCKKLIGYAKDELNDSISTAGEN DLIKNLSKNKKLG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26450			Plant invertase/pectin methyle...		Lus10027655 [exp]	0	1

Compare expression of checked genes

Lus10027655 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.