Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33230 498 / 1e-173 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G26450 497 / 4e-173 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G05610 394 / 8e-132 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G27870 391 / 5e-130 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G49180 372 / 1e-124 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G06830 353 / 1e-117 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G11580 344 / 4e-114 ATPMEPCRA methylesterase PCR A (.1) AT5G53370 342 / 1e-112 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT5G04960 338 / 9e-112 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G45220 337 / 1e-111 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039927 [exp] 847 / 0 AT2G26450 598 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018335 [exp] 392 / 3e-132 AT3G05610 446 / 3e-149 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006940 [exp] 384 / 3e-129 AT3G05610 569 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10023775 [exp] 382 / 1e-128 AT5G49180 454 / 3e-154 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10003968 [exp] 381 / 3e-128 AT5G49180 456 / 3e-155 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10020909 [exp] 377 / 1e-126 AT3G05610 547 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10033466 [exp] 370 / 6e-124 AT3G05610 556 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10002976 [exp] 350 / 2e-116 AT2G26450 429 / 2e-144 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008203 [exp] 348 / 2e-115 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G051200 [exp] 582 / 0 AT2G26450 634 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.006G134700 [exp] 562 / 0 AT4G33230 608 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G209000 [exp] 419 / 2e-143 AT4G33230 483 / 2e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G021600 [exp] 417 / 2e-142 AT4G33230 484 / 1e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G021300 [exp] 390 / 8e-132 AT4G33230 459 / 5e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G010464 [exp] 384 / 2e-129 AT5G27870 619 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G209200 [exp] 380 / 6e-128 AT5G49180 459 / 2e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.013G013400 [exp] 378 / 7e-127 AT3G05610 580 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.005G022900 [exp] 376 / 3e-126 AT3G05610 593 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G247600 [exp] 371 / 2e-124 AT3G10710 609 / 0.0 root hair specific 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10027656 pacid=23151209 polypeptide=Lus10027656 locus=Lus10027656.g ID=Lus10027656.BGIv1.0 annot-version=v1.0 ATGTCGTATCAACAGACTTGCATCGACGGATTTCCTGACGGGAAGGCGAAGACCGAGATGGAGAAGAACTTTAATTCGTCGAAGGAGTTCACGAGTAACT CGCTGGCAGTGGTTGCAACGTCGGATTCGTTTCTCTCGGCGGTTAACAATCTCATTCATGGTCGTCGACTTTTGGGCAATGAGGAGGATAATGATGGGGA TGATCAGTTTCCGGGTTGGGTTAGTCATGAGGATAGGAGGATGCTGAAAGGTGCTGCTACTGCTGATAAACCAAAGCCTAATAAGACTGTGGCTAAAGAT GGGAGTGGGGATTTCAAAACTATTAATGAAGCTATCAAAGCCATCCCTGAGAAATATGATGGAAGGTACATCATTTATGTAAAGCAAGGAGTATACGAAG AGAGCGTGACAATAGAAAAGAGGATGGAGAACGTTACTATATATGGTGATGGATCGCAGAAAAGCATTGTTACTGGAAGCAAGAATTTTGCTGATGGTGT TCGCACTTTAGAGACTGCAACCTTTGTTGTACTAGCGAATGGGTTTGTGAGCCAAGCAATGGGGTATAGAAACACAGCCGGGGCATCAAAGCACCAAGCA GTAGCAATACGCGTGCAAGGAGACAAAGCAGTGTTCATAAACTCACGATTCGAAGGATACCAAGACACACTCTACGCCCAAAACCACCGACATTTCTACA AGAGCTGCGTGATTTCCGGCACCGTGGATTTCATCTTCGGGGATGCCGCGGCAGTCTTCCAGAACTGCCTCATCCTGCTGAGGAAGCCCATGGAAAACCA ACAGAACACCATTACCGCTCAGGGAAGGATGGACAAGTACCAGAGCACGGGGTTCGTGCTCCAGAACTGCAGGATCGAGGCCGACAAGGACTTGGACGGC CCCGCCAAGGACAAAGTGAAGAGCTACCTCGGACGGCCCTGGAGGGATTATTCGAGGACGGTGGTCATGGAATCGACGATCGATTTGATCGAGCCGGAAG GATGGTTGGCTTGGGAAGGCGAGAAGGGACTTAAAACGTTGTATTATGCTGAGTATGGGAATAAAGGGCCCGATTCCGGTACGGACAAGCGGGTCAAGTG GCCTGGGTTCCACGTCATTAATCGGGACGAGGCGACGAAATTTACGGTCGTACCCTTCATACAGGGAGACGAATGGGTTGATGAAGCTGGAGCGCAAGTC AAAGTTGGGTTATTTAATTAG
AA sequence Show only first row Show all	>Lus10027656 pacid=23151209 polypeptide=Lus10027656 locus=Lus10027656.g ID=Lus10027656.BGIv1.0 annot-version=v1.0 MSYQQTCIDGFPDGKAKTEMEKNFNSSKEFTSNSLAVVATSDSFLSAVNNLIHGRRLLGNEEDNDGDDQFPGWVSHEDRRMLKGAATADKPKPNKTVAKD GSGDFKTINEAIKAIPEKYDGRYIIYVKQGVYEESVTIEKRMENVTIYGDGSQKSIVTGSKNFADGVRTLETATFVVLANGFVSQAMGYRNTAGASKHQA VAIRVQGDKAVFINSRFEGYQDTLYAQNHRHFYKSCVISGTVDFIFGDAAAVFQNCLILLRKPMENQQNTITAQGRMDKYQSTGFVLQNCRIEADKDLDG PAKDKVKSYLGRPWRDYSRTVVMESTIDLIEPEGWLAWEGEKGLKTLYYAEYGNKGPDSGTDKRVKWPGFHVINRDEATKFTVVPFIQGDEWVDEAGAQV KVGLFN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33230			Plant invertase/pectin methyle...		Lus10027656 [exp]	0	1

Compare expression of checked genes

Lus10027656 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.