Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18440 637 / 0 ATALMT9 aluminum-activated malate transporter 9 (.1) AT1G18420 590 / 0 Aluminium activated malate transporter family protein (.1) AT1G25480 546 / 0 Aluminium activated malate transporter family protein (.1) AT1G68600 493 / 2e-169 Aluminium activated malate transporter family protein (.1) AT2G17470 484 / 4e-166 AtALMT6, ALMT6 ALuminium activated Malate Transporter 6, Aluminium activated malate transporter family protein (.1) AT4G17970 233 / 6e-69 ATALMT12, ALMT12 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) AT5G46610 232 / 1e-68 Aluminium activated malate transporter family protein (.1.2.3) AT4G00910 211 / 3e-61 Aluminium activated malate transporter family protein (.1) AT5G46600 211 / 9e-61 Aluminium activated malate transporter family protein (.1) AT1G08430 202 / 3e-58 ALMT1, ATALMT1 ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1, aluminum-activated malate transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039926 [exp] 561 / 0 AT3G18440 403 / 6e-138 aluminum-activated malate transporter 9 (.1) Lus10039925 [exp] 511 / 3e-180 AT3G18440 290 / 5e-94 aluminum-activated malate transporter 9 (.1) Lus10034301 [exp] 520 / 6e-180 AT3G18440 555 / 0.0 aluminum-activated malate transporter 9 (.1) Lus10021694 [exp] 491 / 2e-168 AT1G25480 524 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10024710 [exp] 264 / 4e-82 AT3G18440 296 / 1e-94 aluminum-activated malate transporter 9 (.1) Lus10004556 [exp] 248 / 7e-75 AT4G17970 649 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10000898 [exp] 243 / 6e-73 AT4G17970 666 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10035037 [exp] 240 / 2e-72 AT1G25480 295 / 3e-94 Aluminium activated malate transporter family protein (.1) Lus10030975 [exp] 236 / 3e-70 AT4G17970 643 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G053400 [exp] 788 / 0 AT3G18440 681 / 0.0 aluminum-activated malate transporter 9 (.1) Potri.008G118600 [exp] 580 / 0 AT1G25480 646 / 0.0 Aluminium activated malate transporter family protein (.1) Potri.010G127400 [exp] 562 / 0 AT3G18440 588 / 0.0 aluminum-activated malate transporter 9 (.1) Potri.001G097300 [exp] 275 / 6e-85 AT3G18440 307 / 2e-97 aluminum-activated malate transporter 9 (.1) Potri.003G134100 [exp] 271 / 9e-84 AT3G18440 306 / 2e-97 aluminum-activated malate transporter 9 (.1) Potri.001G144300 [exp] 261 / 4e-80 AT4G17970 634 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Potri.009G017800 [exp] 223 / 4e-66 AT2G27240 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.001G217400 [exp] 219 / 1e-64 AT1G08440 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.001G217200 [exp] 214 / 1e-62 AT2G27240 445 / 6e-153 Aluminium activated malate transporter family protein (.1) Potri.003G145000 [exp] 213 / 6e-62 AT4G00910 484 / 5e-168 Aluminium activated malate transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0307 [flax] [poplar] FUSC PF11744 [flax] [poplar] ALMT Aluminium activated malate transporter
Representative CDS sequence Show only first row Show all	>Lus10027657 pacid=23151279 polypeptide=Lus10027657 locus=Lus10027657.g ID=Lus10027657.BGIv1.0 annot-version=v1.0 ATGACTCTAAACGCGAAAATGGGGTCCTTCCGGTACGGCCTTGCCGAAAAGAGGGAAAAGCTGCTGTCTATGAAGGAACACTCAGTGCTTGGTTTTGCCA ACATTGACAAAGAAGATGAACCTAGGAGTTTCTCTACATACAGGTTTCTTTCGGATAAAATTGTCGGCTTCTGCAGAATGATCCAAGACTTTTCTCGTAT GGCTTATCAGATGGGCCGCTCAGATCCCAGAAAGATCGTTTTTTCTGCCAAGGTCGGTTTGACTTTGATGATTATATCTTTGCTAATCTACTGGAAAGAG CCTATGAAGGAGTTGAGTCAGCATTCTGTTTGGGCTGTTCTTACCGTGGTGGTTGTCTTTGAGTTCAGCATAGGTGCCACACTTAGCAAAGGATTCAACC GTGGACTAGGAACTTTGTCAGCTGGAGGACTTGCTCTGGGAATGGCCGAATTGTCTCAATTGACTGGAGAGTGGGAAGAAGAATTTATTGTTATAAGCAT CTTCATTATGGGGTTCTGTGCAACGTATGCAAAGTTGTTACCCCCCCTGAAGCCTTATGAGTATGGCTTCCGGGTTTACCTGCTAACGTATTGCATGGTA ATGATATCTGGGTATCAGACTCGTGAATTTATCCATACTGCTGTGACGCGATTTCTGCTTATTGCATTGGGTGCGGGTGTCTGTTTGGTAATAAACATAT TCATTTATCCTATTTGGGCTGGGGAAGACTTGCACAACTTGGTGGTGAAGAATTTCATGAGTGTGGCGACTTCTTTGGAAGGTTGTGTAGAGGGGTACCT TAACTGTGTCGAATATGAAAGAATCCCATCGAAAATCCTCACATACCAAGCTTCTGATGACCCACTGTATAGAGGCTACAGATCGGTTGTAGAATCGACA AGCCAAGAAGATGCACTGATGAGTTTCGCAGTGTGGGAACCTCCTCATGGGCCGTACAAATCATGTGGATATCCATGGAGTAATTATGTCAAAGTGAGCG GTGCACTTAGGCATTGTGCATTCATGGTAATGGCACTGCATGGTTGTATACTGTCAGAAATACAGGCTCCAGCTGAACGAAGACAGGTGTTCCGGCAGGA GTTACAAAGAGTAGGAGTTGAAGGGGCTAAAGTGTTGCGGCTCCTTGGTAACAAAATGAAAAACCTTGAGAAGCTAGGTCCAACTGACGTTCTTTATGAA GTGCATGAGGCAGCGGAAGAGCTCCAAACCAAGGTGGACAAGAAATCATATCTCCTTGTAAATTCGGGGTCTTGGGAAATCGGGACATGGGAGAAGGACA TGGGAGAGCCACAGGATATGTTGACTTTCGATGATGACGTAGAAAATCAATTCGTGGAACACAAGGCACACAGTGAAGCTCTGCTAAATTTGAGGTCGCT GACTATACCAAAAGGGTGGGATGATAGAGTACCGCATGTTCCTCTAGCCTCAAACTCAACCCTGCCAACAGGTTTTGGTTCACAGGATGCATATGCAAAC CAGAAATCTTGGCCGAGACGAAATTCATTCGCTGCTGCTGCTTCCTTGCCGCAGATAGAAGAATCCAAGACTTTTGAAAGTGCAAGTGCATTGTCACTGG CAACATTCACGTCACTTTTGACGGAGTTTGTGGCAAGGCTGCAAAACATAGTAGACGCGTATCAGGAGCTAAGTGACAAGGCAAACTTCAAGGATCCCGT GGATGAACCGGTGACAGAGCTGGATGGAGTTTGGACCAGATTAGTTAGACGCATGAAGTTGTCCAAGTGA
AA sequence Show only first row Show all	>Lus10027657 pacid=23151279 polypeptide=Lus10027657 locus=Lus10027657.g ID=Lus10027657.BGIv1.0 annot-version=v1.0 MTLNAKMGSFRYGLAEKREKLLSMKEHSVLGFANIDKEDEPRSFSTYRFLSDKIVGFCRMIQDFSRMAYQMGRSDPRKIVFSAKVGLTLMIISLLIYWKE PMKELSQHSVWAVLTVVVVFEFSIGATLSKGFNRGLGTLSAGGLALGMAELSQLTGEWEEEFIVISIFIMGFCATYAKLLPPLKPYEYGFRVYLLTYCMV MISGYQTREFIHTAVTRFLLIALGAGVCLVINIFIYPIWAGEDLHNLVVKNFMSVATSLEGCVEGYLNCVEYERIPSKILTYQASDDPLYRGYRSVVEST SQEDALMSFAVWEPPHGPYKSCGYPWSNYVKVSGALRHCAFMVMALHGCILSEIQAPAERRQVFRQELQRVGVEGAKVLRLLGNKMKNLEKLGPTDVLYE VHEAAEELQTKVDKKSYLLVNSGSWEIGTWEKDMGEPQDMLTFDDDVENQFVEHKAHSEALLNLRSLTIPKGWDDRVPHVPLASNSTLPTGFGSQDAYAN QKSWPRRNSFAAAASLPQIEESKTFESASALSLATFTSLLTEFVARLQNIVDAYQELSDKANFKDPVDEPVTELDGVWTRLVRRMKLSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10027657 [exp]	0	1
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10025195 [exp]	2.2	0.8313
AT1G79710			Major facilitator superfamily ...		Lus10041620 [exp]	2.6	0.7850
AT2G27950			Ring/U-Box superfamily protein...		Lus10016162 [exp]	6.7	0.7872
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10001718 [exp]	6.9	0.8153
AT1G13900			Purple acid phosphatases super...		Lus10036895 [exp]	7.5	0.7913
AT5G04770		CAT6, ATCAT6	ARABIDOPSIS THALIANA CATIONIC ...		Lus10000962 [exp]	9.8	0.7514
AT1G61670			Lung seven transmembrane recep...		Lus10025135 [exp]	11.6	0.7231
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Lus10014427 [exp]	12.6	0.8157
AT3G52240			unknown protein		Lus10043425 [exp]	14.1	0.7453
AT4G31080			Protein of unknown function (D...		Lus10009547 [exp]	17.9	0.7730

Compare expression of checked genes

Lus10027657 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.