Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43240 971 / 0 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039924 [exp] 1458 / 0 AT3G43240 1006 / 0.0 ARID/BRIGHT DNA-binding domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G135500 [exp] 1163 / 0 AT3G43240 1017 / 0.0 ARID/BRIGHT DNA-binding domain-containing protein (.1) Potri.018G064500 [exp] 1160 / 0 AT3G43240 1029 / 0.0 ARID/BRIGHT DNA-binding domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01388 [flax] [poplar] ARID ARID/BRIGHT DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10027658 pacid=23151206 polypeptide=Lus10027658 locus=Lus10027658.g ID=Lus10027658.BGIv1.0 annot-version=v1.0 ATGATGTTTCATGCTCAAGGTTCTTCAAGGAATCATTGCAGTCTCCTTGCTGTTTTCTGTGGCTCAACGTCTGATTACAAGCGTAATCATTCTCTATCAC CCTCTGATGATCTTGTACCCAGATACCCTATTCCACAGCTTTCCTCTTCAGGGCGTCTTGAGGTTCAGGTACTGAATAATCCAAGTATTAACGGCTTCAG GCAGGCACTTCAGTCCTTTGAGCCCAACATTGTGTATCTGCAAGGAGAGCGAAGTGAATATAGTGAAGAAGTTGGCTCCCTGAGATGGGGAGATGTTGAC TTGTCCTATCCAGAAGCCTTATGCGACCTCTTCGGTTCGACATTGCCTGGCACCGTGTATTTGGAGACTACAAAAGGTGAAGAGTTAGCTGAGGCACTTT ATTCTAAGGGAGTTCCCTATGTCATATATTGGAAGAGTACATTCTCATATTATGCTGCTTTGCACTTCCGGCAAGCACTGTGCTATGTGGTGCAAAGTTC TTGCAGTCACATATGTGATGCATTTCAATTGGCTCTCGCATCATTCAGGCTGTACTGTTCACGGGACAGTAATGGGTTATCTTCAAATAGCCAGAAACCC AGCAGTAAACCTGGACCCTGCTTGCTTGGAGAGTCTCCTAAGATTGATATTACTATACCTGAGAATGATATTCCAGATGAAGGCTCCTCTGACAATCTTC CTGCGATAAAAATATATGATGATGATGTGACTCTACGGTTTCTTGTTTGTGGCTTATCCGGCACACTGGATTCATGTTTATTAGGATCTCTGGAGGACGG GCTCAATGCTTTGTTGAATATTGAGATTCGTGGTAGTAAGCTTCACAATAGGACCAGTGCACCACCTCCTCCACTTCAGGCAGGAACATTTTCTCGTGGT GTTGTAACCATGCGGTGTGATTTGTCAACATGTAGTTCTTCTCATATTTCACTTCTAGTCTCTGGTAGTGCTCAGACGTGCTTCAATGATCAGTTTTTGG AAAATCATATTAAGCAAGAAATTATTCAGAATAGTCAGCTAGTCCATGCCTTGCCGACATCTGAGGAAATTATAGTATCTACTGAGCCAAGAAAATCTGC TTCCATAGCTTGCGGGGCAAGTGTTTTTGAAGTTTGCATGAAGGTTCCTACATGGGCTTCACAGGTTCTGCGCCAACTGGCTCCAGATGTATCTTATCGT AGCTTAGTTACGCTGGGAATAGGCAGCATTCACGGATTGTCAGTTGCTTCTTTTGAAAAGGATGATGCAGATCGCCTGCTTTTCTTTTGTGCAAAACAAG GAAAAGAGTTTCAATTAAACAACCCTCTGTTGACTAGGCCTCCTAGCTGGTTGATAACTCCGGCACCCAGTCGAAAAATACACGATCTATCCTGGGAAAC AAGACCGTTCTCTGATGTGAAAGGTGAGAAGGAGCGTAATATTAAACGGAAGCTGAATATTGCAGCAATGAGTCCCATTCCTCATACTCGCCGTCATAAG ATTCTCCCTTTCTCTGCGTTATCTGAGACTGACCGATATGACGGAGAACAAGTCAAACCCATGATACCTGTTGCGGCCCCGAAGCATAGTTCTGCTGGTT CCGTTCCTGTTACACACAGGAAAACGACAAGTTCTTATCAGGCTCAGCAGATAATCTCTCTGAATCCACTCCCTCTTAAAAAACATGGTTGTGGGAGAGC GCCTATACATGCATGCTCTGAGGAGGAGTTCTTGAGAGATGTTATGCAGTTCTTGATTCTTCGTGGGCATACTAGACTTGTTCCTCAAGGCGGTCTTCCG GAGTTCCCTGATGCCATTCTCAACGCTAAACGGCTTGACCTATTCAACCTGTATCGGGAGGTTGTTTCAAGAGGTGGGTTTCATGTTGGAAATGGAATCA ACTGGAAGGGGCAGGTTTTCTCGAAGATGCGCAATCATACACTCACTAATCGAATGACGGGTGTTGGCAACACGCTGAAAAGGCATTATGAAACTTATCT CCTAGAATATGAGTTGGCGCATGAAGACGTAGATGGAGAATGCTGCTTGTTGTGTCACAGTAGCGCAGCAGGAGACTGGGTGAACTGTGGTATATGCGGG GAGTGGGCTCACTTTGGTTGTGACAGGCGCCAGGGACTTGGCGCTTTTAAGGACTATGCTAAAACAGATGGACTGGAGTACATTTGTCCACATTGCAGTG TTACAAATTTCAAGAAGAAATCCCAGAAAACGGCAAATGGGTTTTGA
AA sequence Show only first row Show all	>Lus10027658 pacid=23151206 polypeptide=Lus10027658 locus=Lus10027658.g ID=Lus10027658.BGIv1.0 annot-version=v1.0 MMFHAQGSSRNHCSLLAVFCGSTSDYKRNHSLSPSDDLVPRYPIPQLSSSGRLEVQVLNNPSINGFRQALQSFEPNIVYLQGERSEYSEEVGSLRWGDVD LSYPEALCDLFGSTLPGTVYLETTKGEELAEALYSKGVPYVIYWKSTFSYYAALHFRQALCYVVQSSCSHICDAFQLALASFRLYCSRDSNGLSSNSQKP SSKPGPCLLGESPKIDITIPENDIPDEGSSDNLPAIKIYDDDVTLRFLVCGLSGTLDSCLLGSLEDGLNALLNIEIRGSKLHNRTSAPPPPLQAGTFSRG VVTMRCDLSTCSSSHISLLVSGSAQTCFNDQFLENHIKQEIIQNSQLVHALPTSEEIIVSTEPRKSASIACGASVFEVCMKVPTWASQVLRQLAPDVSYR SLVTLGIGSIHGLSVASFEKDDADRLLFFCAKQGKEFQLNNPLLTRPPSWLITPAPSRKIHDLSWETRPFSDVKGEKERNIKRKLNIAAMSPIPHTRRHK ILPFSALSETDRYDGEQVKPMIPVAAPKHSSAGSVPVTHRKTTSSYQAQQIISLNPLPLKKHGCGRAPIHACSEEEFLRDVMQFLILRGHTRLVPQGGLP EFPDAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHEDVDGECCLLCHSSAAGDWVNCGICG EWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVTNFKKKSQKTANGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G43240	ARID		ARID/BRIGHT DNA-binding domain...		Lus10027658 [exp]	0	1
AT1G05200		GLUR3, ATGLR3.4	glutamate receptor 3.4 (.1.2)		Lus10039671 [exp]	1.0	0.8969
AT1G55090			carbon-nitrogen hydrolase fami...		Lus10003203 [exp]	2.6	0.8295
AT4G24290			MAC/Perforin domain-containing...		Lus10035789 [exp]	6.8	0.7991
AT3G14610		CYP72A7	"cytochrome P450, family 72, s...		Lus10025006 [exp]	7.1	0.8599
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10011805 [exp]	8.0	0.8546
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10001396 [exp]	10.7	0.8429
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10028848 [exp]	10.7	0.8554
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10007095 [exp]	14.4	0.7684
AT1G79450		ALIS5	ALA-interacting subunit 5 (.1....		Lus10033283 [exp]	16.6	0.8390
AT2G36810			ARM repeat superfamily protein...		Lus10014405 [exp]	16.7	0.7939

Compare expression of checked genes

Lus10027658 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.