Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19115 73 / 5e-16 unknown protein AT1G17400 52 / 1e-07 unknown protein AT1G72490 45 / 2e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039921 [exp] 397 / 3e-142 AT1G17400 80 / 2e-18 unknown protein Lus10000079 [exp] 140 / 6e-43 ND 40 / 2e-05 Lus10015679 [exp] 72 / 2e-14 AT1G72490 239 / 1e-76 unknown protein Lus10037689 [exp] 70 / 7e-14 AT1G72490 246 / 9e-81 unknown protein Lus10008123 [exp] 50 / 6e-07 AT1G72490 200 / 2e-62 unknown protein Lus10013160 [exp] 49 / 8e-07 AT1G72490 202 / 1e-63 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G140100 [exp] 105 / 2e-27 AT1G72490 143 / 2e-41 unknown protein Potri.003G068300 [exp] 69 / 6e-14 AT1G72490 279 / 2e-94 unknown protein Potri.001G166700 [exp] 63 / 1e-11 AT1G72490 269 / 2e-90 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027660 pacid=23151298 polypeptide=Lus10027660 locus=Lus10027660.g ID=Lus10027660.BGIv1.0 annot-version=v1.0 ATGAAGTTACTGGCGTGGATGCAACAGAAGCTTGGTGGAAGAAATGGCAACAAGAAGCAAAACCAAAATGCTTCAGCCCTACACTTTGATTCTGTGGAAA CAGAAGCTCCAAAAGAAGAAATCCGCGACTGGCCTCACGAGTTGCTTACAATAGGAACGTTAGGATCTAATTGCACCGCTGGTGTTCCCGAGTCGTTGAA AGAGGAAATCCTGACGAATACCATCAATTGTCACGATGACGACGGCATTGAGAGCAAGACGACATTGTCTTTTCCAGGAAAAGTGAAAGGGAAAGACCTG CTTCCTGATCATCATCAGCACCCACACAATGTCAAGATCAACAAGAGGTCGTTATCGTTTCTTTTGAACAAGGCGTTCGTATGCAATGGAGGATTCAGCG CTCCTTCTTCTCCTCGACGCTTGACGACAACAGATCAACTGCATCCCGACTCCGCAATGGAAAAGATACTCAAGTCAATCCTAAACAAGAAGATATATCC CCAAAACCCTGCACATCTCGCTACACTGTCTAGGAAAATGTACCTGGAAAACAGACATAAGAAGAAGCAATTACAGTCCCCGGAAATCGATCTCCAACAA GACTGTGGCGACTATCACGACAAGCTGCAGCAGCAGACAGGTGATGAAGGAAGTAAATGGGACAAAACAGATTCTGAATGTGAGTAG
AA sequence Show only first row Show all	>Lus10027660 pacid=23151298 polypeptide=Lus10027660 locus=Lus10027660.g ID=Lus10027660.BGIv1.0 annot-version=v1.0 MKLLAWMQQKLGGRNGNKKQNQNASALHFDSVETEAPKEEIRDWPHELLTIGTLGSNCTAGVPESLKEEILTNTINCHDDDGIESKTTLSFPGKVKGKDL LPDHHQHPHNVKINKRSLSFLLNKAFVCNGGFSAPSSPRRLTTTDQLHPDSAMEKILKSILNKKIYPQNPAHLATLSRKMYLENRHKKKQLQSPEIDLQQ DCGDYHDKLQQQTGDEGSKWDKTDSECE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17400			unknown protein		Lus10027660 [exp]	0	1
AT1G43245			SET domain-containing protein ...		Lus10018874 [exp]	10.0	0.6836
AT2G15730			P-loop containing nucleoside t...		Lus10042667 [exp]	13.8	0.6742
AT4G17085			Putative membrane lipoprotein ...		Lus10029696 [exp]	40.5	0.6592
AT1G25580	NAC	ANAC008, SOG1	SUPPRESSOR OF GAMMA RADIATION ...		Lus10021708 [exp]	45.3	0.6405
AT3G28670			oxidoreductase, zinc-binding d...		Lus10028219 [exp]	46.1	0.6171
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Lus10010818 [exp]	50.2	0.6248
AT1G70150			zinc ion binding (.1)		Lus10029210 [exp]	61.1	0.6176
AT2G26770		SCAB1	stomatal closure-related actin...		Lus10036073 [exp]	61.5	0.5765
AT1G56280		ATDI19	drought-induced 19 (.1.2)		Lus10041945 [exp]	64.3	0.5851
AT4G36740	HD	HB-5, ATHB40	homeobox protein 40 (.1)		Lus10024031 [exp]	71.5	0.6041

Compare expression of checked genes

Lus10027660 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.