Plant FIBer expression Database

Lus10027661 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G19130 295 / 4e-103 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039920
[exp]
372 / 1e-133 AT1G19130 295 / 3e-103 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G140000
[exp]
284 / 6e-99 AT1G19130 269 / 6e-93 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0029 Cupin PF06172 Cupin_5 Cupin superfamily (DUF985)
Representative CDS sequence
>Lus10027661 pacid=23151306 polypeptide=Lus10027661 locus=Lus10027661.g ID=Lus10027661.BGIv1.0 annot-version=v1.0
ATGGTATATGCTGCATCAGCGATCGTGAAAAGATTGAATCTTGAGCCTCACCCAGAAGGTGGTTTCTTCTTCGAAACCTATCGGGACACTTCCATTACTC
TCTCCACCTCTCAGCTTCCCTCCACTTTTAAGGTTGACCGTCCCGTTAGCACATCTATCTACTTCATGCTTCCTTCTGGGAGTGTGTCTGCTCTTCATCG
AATCCCCTGTGCGGAGACCTGGCATTTTTACTTGGGAGAACCTCTTACGGTATTGGAACTAAGTGATGATGGAACCATAAAGTTAACCTGCCTCGGACCT
GATCTTGTCCGTGACAATCAACAACCACAGTACACTGTGCCTCCGAATGTCTTGTTCGGTTCTTTTCCAACTAAAGACTACACCATCTCCTCTGATGGCT
CAGTTGTCAAGAATGAGCCAAGGGACAAAGAGAGCCACTACTCCTTGGTAGGTTGCACTTGCGCACCTGCTTTTCAGTTTCAGGACTTTGAGATGGCAAA
GCGATCCGACCTTGTTTCGAAATTTCCTCAGCATGAGTCTTTGATCACTTTGCTCACATACAGCAACGAATGA
AA sequence
>Lus10027661 pacid=23151306 polypeptide=Lus10027661 locus=Lus10027661.g ID=Lus10027661.BGIv1.0 annot-version=v1.0
MVYAASAIVKRLNLEPHPEGGFFFETYRDTSITLSTSQLPSTFKVDRPVSTSIYFMLPSGSVSALHRIPCAETWHFYLGEPLTVLELSDDGTIKLTCLGP
DLVRDNQQPQYTVPPNVLFGSFPTKDYTISSDGSVVKNEPRDKESHYSLVGCTCAPAFQFQDFEMAKRSDLVSKFPQHESLITLLTYSNE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G19130 unknown protein Lus10027661
[exp]
0 1
AT2G32080 PUR ALPHA-1, PU... purin-rich alpha 1 (.1.2) Lus10001781
[exp]
4.8 0.9268
AT1G06620 2-oxoglutarate (2OG) and Fe(II... Lus10001108
[exp]
6.0 0.9393
AT4G27290 S-locus lectin protein kinase ... Lus10016871
[exp]
7.5 0.9427
AT2G37050 Leucine-rich repeat protein ki... Lus10004275
[exp]
7.6 0.9448
AT3G55960 Haloacid dehalogenase-like hyd... Lus10002484
[exp]
8.5 0.9423
AT1G30270 PKS17, ATCIPK23... SNF1-RELATED PROTEIN KINASE 3.... Lus10042816
[exp]
9.5 0.9339
AT3G55960 Haloacid dehalogenase-like hyd... Lus10004810
[exp]
11.8 0.9388
AT4G34840 ATMTN2, ATMTAN2 ARABIDOPSIS METHYLTHIOADENOSIN... Lus10026287
[exp]
12.0 0.9130
AT1G28340 AtRLP4 receptor like protein 4 (.1) Lus10015417
[exp]
13.7 0.9272
AT5G13700 ATPAO1, APAO polyamine oxidase 1 (.1) Lus10039599
[exp]
13.9 0.9351

Lus10027661 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.