Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19140 364 / 1e-126 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039930 [exp] 573 / 0 AT1G19140 365 / 3e-127 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G139800 [exp] 399 / 1e-140 AT1G19140 394 / 1e-138 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08511 [flax] [poplar] COQ9 COQ9
Representative CDS sequence Show only first row Show all	>Lus10027662 pacid=23151226 polypeptide=Lus10027662 locus=Lus10027662.g ID=Lus10027662.BGIv1.0 annot-version=v1.0 ATGTACAGAACGGCGGGGAAACAGCTCCTTCGCGCCTCTAACTGCTTTTCAGGCAGGAATATCCGTCTCCGATTCCCTAACCCACAGACTCTACTTTCTG GCAAAACCTTCTCCACTTCTCCGCAGCCTCCTCATTCCGGCCAAAATCAAATCCCTCGCACGTTTGTCAATTCTCTCAACTTCACCGAATCGACTGCCTC CGCCTCAGCTTCTTCATCTGCCGGATCGTCGGCTTCGCCAACTGCTGAGGATGCCCAACGACTAAGGAGGGAGAGTCCGAAAGTTGAGCACCAAGATGAG CAAGCTCGATTGCTTCAAGCCTCACTCCGTCACGTGTCAAGGCTGGGCTGGTCTGAAGATGCATTGATGGCTGGGGCGAGGGATGTTGGCGTCTCGCCTT CAATCGTTGGGTCTTTCCCGAGAAAAGATGCTGCCTTAGTTGAGTATTTCATGGATGATTGCTTGGAGAAGCTTGTCGATAAAATTGAGACCGGAACCGA ATTAAGCAACTTGTCGCCTAGTGAGCGTATCTCCAAACTTATCAGGATTCGTCTGGAAATGCAAGCTCCCTACATATCAAAGTGGCCGCAAGCCCTCAGC ATTCAGGCAAACCCTTTGAACTTCCCTACGAGTTTTAAACAGCGAGCTAGCTTGATTGATGAGATTTGGCATGCCTCTGGTGATGGTGGAAATGACATGG AGTGGTATGTGAAACGTACTGTCCTTGGAGGAGTATATTCAACTACAGAGATCTATATGTTGACTGATAGTTCCCCAGAGTTCCGGGATACATGGGCATT CTTGGAGGATCGGGTCAGAGATGCGTTTGATCTGAAGAAGACCATTCAAGAGGCAACGTATCTGGCGGAAGCTGTTGGTGCTGGGGTGGGAAACTCATTC CAAGGGTTTATGAAGAAAGTTCTTCAGCGGTGA
AA sequence Show only first row Show all	>Lus10027662 pacid=23151226 polypeptide=Lus10027662 locus=Lus10027662.g ID=Lus10027662.BGIv1.0 annot-version=v1.0 MYRTAGKQLLRASNCFSGRNIRLRFPNPQTLLSGKTFSTSPQPPHSGQNQIPRTFVNSLNFTESTASASASSSAGSSASPTAEDAQRLRRESPKVEHQDE QARLLQASLRHVSRLGWSEDALMAGARDVGVSPSIVGSFPRKDAALVEYFMDDCLEKLVDKIETGTELSNLSPSERISKLIRIRLEMQAPYISKWPQALS IQANPLNFPTSFKQRASLIDEIWHASGDGGNDMEWYVKRTVLGGVYSTTEIYMLTDSSPEFRDTWAFLEDRVRDAFDLKKTIQEATYLAEAVGAGVGNSF QGFMKKVLQR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19140			unknown protein		Lus10027662 [exp]	0	1
AT3G19950			RING/U-box superfamily protein...		Lus10010179 [exp]	2.0	0.7932
AT3G55830		EPC1	ECTOPICALLY PARTING CELLS, Nuc...		Lus10031680 [exp]	4.0	0.8188
AT2G17420		NTR2, ATNTRA, N...	NADPH-DEPENDENT THIOREDOXIN RE...		Lus10037596 [exp]	8.8	0.7971
AT1G11050			Protein kinase superfamily pro...		Lus10012701 [exp]	11.6	0.7932
AT4G35070			SBP (S-ribonuclease binding pr...		Lus10014118 [exp]	14.8	0.7750
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10008743 [exp]	15.9	0.7832
AT3G52430		PAD4, ATPAD4	ARABIDOPSIS PHYTOALEXIN DEFICI...		Lus10039617 [exp]	20.6	0.7906
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10018178 [exp]	24.3	0.7789
AT3G62580			Late embryogenesis abundant pr...		Lus10025037 [exp]	28.8	0.7561
AT1G48040			Protein phosphatase 2C family ...		Lus10017106 [exp]	31.5	0.7453

Compare expression of checked genes

Lus10027662 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.