Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035448 [exp] 65 / 4e-13 ND / Lus10006023 [exp] 59 / 7e-11 ND / Lus10036784 [exp] 54 / 4e-09 ND / Lus10037746 [exp] 51 / 3e-08 ND / Lus10011705 [exp] 42 / 7e-05 ND / Lus10021600 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027664 pacid=23151314 polypeptide=Lus10027664 locus=Lus10027664.g ID=Lus10027664.BGIv1.0 annot-version=v1.0 ATGCATTGTTGTCATTGTCAACTGACAGGCCACAATACAAGGAGATGCGACTCTAACCTTGGGACACAAGCAACCGAGCAGCCAAATCCTCCAACAGCTC GTGGTAAGAGACGTCAAACGACTACCCCACCAACAACCCAACCGCAACAACCTGAACCGACACGGAATGTACCTCCCGTAGGTAATAGGCAGGATCCTGC TAGAAGGGTTAGGAGGTGTTCTTTGTGCAAAGGGACTTACCACAACGCACGGTGTTGCCTACGTGGGAGGGGGATTCAGATTGTACAGGTTCGGCCGAAT GCTAGGCATGTCCAAGATGTGGAGGTCCAGCAAGTTCTTCGGGGAGCTGGAGCTTACGTCTCACCTACAACTGGTAACACATATTACAGAGGCTCTTTGG GCAATCAACATGTGGTAGCCAGCCACCAGTTACACAACCGTCCCAGTAGAAGGAAGCGACATGAACAGTCCAAGGAATTTGTCTTATTTTGTGTCAAGGC ATTACGGAGGCTTAGTATGTAG
AA sequence Show only first row Show all	>Lus10027664 pacid=23151314 polypeptide=Lus10027664 locus=Lus10027664.g ID=Lus10027664.BGIv1.0 annot-version=v1.0 MHCCHCQLTGHNTRRCDSNLGTQATEQPNPPTARGKRRQTTTPPTTQPQQPEPTRNVPPVGNRQDPARRVRRCSLCKGTYHNARCCLRGRGIQIVQVRPN ARHVQDVEVQQVLRGAGAYVSPTTGNTYYRGSLGNQHVVASHQLHNRPSRRKRHEQSKEFVLFCVKALRRLSM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10027664 [exp]	0	1
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Lus10021707 [exp]	1.4	0.9631
AT2G39210			Major facilitator superfamily ...		Lus10021512 [exp]	4.0	0.9480
					Lus10017557 [exp]	4.5	0.9372
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10001876 [exp]	5.1	0.8948
AT1G56220			Dormancy/auxin associated fami...		Lus10020661 [exp]	7.3	0.9218
AT5G63160		BT1	BTB and TAZ domain protein 1 (...		Lus10033038 [exp]	7.7	0.9276
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10010373 [exp]	8.3	0.9414
AT2G29970			Double Clp-N motif-containing ...		Lus10038320 [exp]	9.9	0.8781
					Lus10036703 [exp]	10.5	0.9157
					Lus10022884 [exp]	10.9	0.8036

Compare expression of checked genes

Lus10027664 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.