Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26460 621 / 0 SMU2 SUPPRESSORS OF MEC-8 AND UNC-52 2, RED family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039918 [exp] 860 / 0 AT2G26460 745 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 2, RED family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G064100 [exp] 684 / 0 AT2G26460 706 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 2, RED family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07807 [flax] [poplar] RED_C RED-like protein C-terminal region PF07808 [flax] [poplar] RED_N RED-like protein N-terminal region
Representative CDS sequence Show only first row Show all	>Lus10027665 pacid=23151208 polypeptide=Lus10027665 locus=Lus10027665.g ID=Lus10027665.BGIv1.0 annot-version=v1.0 ATGTCGTCCGGCAAACGCCACCACAAGGAGAAATTCGCTCGCAAGAAAGAGGAGAAACCGGAGGAACCAGAGACGCCTAGATACAGGGACCGTGCGAAGG AGCGAAGAGAAGATCAGAATCCCGATTATGAGCCCACGGAATTGGGTTCTTTTCATGCCGTTGCGCCTCCTGGTGCGCTTGATATCCGCGCAGCAGAGGC CCAAAAGATTTCCATTGAGAAGAGCAAGTACCTTGGAGGTGATGTGGAGCATACGCATTTGGTGAAAGGGCTGGACTATGCCCTCCTCAATAAAGTTAGA AGTGAGATTGGGAAAACGGATGCTGATGATGATGCCGACAACAAGTCTAGACAATCGAAGGAAGATCAACAGGTATCCTTTCGGACAGCAACTGGAAAGG CTGTGTATCAGAGGATAGTCAAGCCTCAAACTATTATGAAGACAAATGAGATGTTTCTTCCCGGTAGAATGTCATTTATATATAATACGAGAAGCAAAGC TGATTGCCCTGTCCCTGAGGAAATGGTCACTGTCAGTGTTGATGGCTCTGTGCTCGACAGAATTGCTAAAATTATGTCATATCTTCGCCTTGGCTCTTCT GGAAAGGTTCTCAAGAAGAAAAAGAAAGACAAAGGTGCGAAGGTAAAAACTTCAACTGTTGGTAATGAGTATGGTGAAGAGGATAGACGAACAAAGCATA GTGAGTCAATCTCAAGTATGAAGATCGAGAGTCTGCCCCCACCTCCTCCACCTCCTATGAAGAGTCAGCCTGATTCTATGGCGAAGCAGGAACCTGTCTC TATAACAGATGAGGAGGACATATTTGTGGGAGACGGTATTGACTATAGTATACCTGGGAAAGACATGAGTCAAAGCCCTATCTCAGAGGACATGGAAGAG TCTCCTCGTAACAAAGAAAAAGTTCTGTATTTCAGTGAACCGGCTTATGGCCCTATCCCTCCTGCACCTTCTCAAGAATGGCAGGACCCAAATGGCTATG ATGCTGTTCAAGCACAGGCATATGCGAGTGCCTACCAGGGAGGAGAGTGGCAGGAGTATCAATATGCTGAGCAAGTAGCCTATCCTGACCAGTACCTGCA ACAAACTTACGAGATGCAGGTGGGTGCAGAGATCCCACAAGATCCACACTTTATGACGCAAGAAGAAAAAGACCGGGGTTTAGGGTCAGTGTTCAAGCGA GACGATCAAAGGCTTCAACAACTGAGAGAGAAAGACGCAAGAGAGAAAGACCCCAATTTTGTGTCTGAGAGCTACTCTGAATGTTATCCTGGTTATCAAG AATACAACCGCGAAGTTGTCGATAGTGATGATGAAGATGACTTGTCCAAAATGGATATGGGCGGGCGGGCAAAAGGGCGTCTTCATCGGTGGGATTTTGA AACAGAGGAAGACTGGGCAAAGTACAATGAGCAGAAGGAAGCAATGCCTAAAGCAGCGTTCCAGTTTGGGGTGAAGATGCAAGATGGTAGAAAGACAAGG AAACAAAACAAGGACCAGAAGCTGAATAATGAGCTGCACAAGATTAACAAACTTCTGGCCAGAAAGAAAATGGACAAGGATGGCGGTGATGATGGTGGCG ACTACGACGATGACATACAAGCCGGCAAAAAACAACGATTATGA
AA sequence Show only first row Show all	>Lus10027665 pacid=23151208 polypeptide=Lus10027665 locus=Lus10027665.g ID=Lus10027665.BGIv1.0 annot-version=v1.0 MSSGKRHHKEKFARKKEEKPEEPETPRYRDRAKERREDQNPDYEPTELGSFHAVAPPGALDIRAAEAQKISIEKSKYLGGDVEHTHLVKGLDYALLNKVR SEIGKTDADDDADNKSRQSKEDQQVSFRTATGKAVYQRIVKPQTIMKTNEMFLPGRMSFIYNTRSKADCPVPEEMVTVSVDGSVLDRIAKIMSYLRLGSS GKVLKKKKKDKGAKVKTSTVGNEYGEEDRRTKHSESISSMKIESLPPPPPPPMKSQPDSMAKQEPVSITDEEDIFVGDGIDYSIPGKDMSQSPISEDMEE SPRNKEKVLYFSEPAYGPIPPAPSQEWQDPNGYDAVQAQAYASAYQGGEWQEYQYAEQVAYPDQYLQQTYEMQVGAEIPQDPHFMTQEEKDRGLGSVFKR DDQRLQQLREKDAREKDPNFVSESYSECYPGYQEYNREVVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEDWAKYNEQKEAMPKAAFQFGVKMQDGRKTR KQNKDQKLNNELHKINKLLARKKMDKDGGDDGGDYDDDIQAGKKQRL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26460		SMU2	SUPPRESSORS OF MEC-8 AND UNC-5...		Lus10027665 [exp]	0	1
AT3G19590		BUB3.1	BUB \(BUDDING UNINHIBITED BY B...		Lus10023814 [exp]	4.4	0.8922
AT5G03670			unknown protein		Lus10035565 [exp]	11.6	0.8696
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10023877 [exp]	12.4	0.8722
AT3G48710			DEK domain-containing chromati...		Lus10035905 [exp]	13.7	0.8478
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10022129 [exp]	14.1	0.8373
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10008269 [exp]	16.1	0.8682
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10033951 [exp]	19.4	0.8668
AT5G36740			Acyl-CoA N-acyltransferase wit...		Lus10022055 [exp]	19.5	0.8363
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10014380 [exp]	20.7	0.8674
AT5G14640		ATSK13	shaggy-like kinase 13 (.1)		Lus10013088 [exp]	22.2	0.8401

Compare expression of checked genes

Lus10027665 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.