Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19110 859 / 0 inter-alpha-trypsin inhibitor heavy chain-related (.1) AT1G72500 638 / 0 unknown protein AT5G60710 57 / 4e-08 Zinc finger (C3HC4-type RING finger) family protein (.1) AT1G08050 56 / 8e-08 Zinc finger (C3HC4-type RING finger) family protein (.1) AT3G54780 50 / 5e-06 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3) AT2G38970 49 / 1e-05 Zinc finger (C3HC4-type RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039919 [exp] 1439 / 0 AT1G19110 877 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Lus10008122 [exp] 700 / 0 AT1G19110 732 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Lus10013159 [exp] 663 / 0 AT1G19110 709 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Lus10021458 [exp] 55 / 2e-07 AT5G60710 738 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10041321 [exp] 53 / 1e-06 AT5G60710 730 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10016102 [exp] 52 / 1e-06 AT5G60710 764 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10040413 [exp] 44 / 0.0004 AT2G38970 846 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10023527 [exp] 44 / 0.0004 AT2G38970 887 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G062500 [exp] 939 / 0 AT1G19110 882 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Potri.001G166800 [exp] 746 / 0 AT1G19110 753 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Potri.003G068000 [exp] 724 / 0 AT1G19110 734 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Potri.009G010350 [exp] 53 / 7e-07 AT5G60710 763 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.002G107902 [exp] 50 / 6e-06 AT5G49665 675 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.008G038450 [exp] 49 / 1e-05 AT2G38970 889 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.010G223766 [exp] 46 / 9e-05 AT2G38970 892 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.001G082150 [exp] 45 / 0.0002 AT2G38970 466 / 4e-156 Zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0128 [flax] [poplar] vWA-like PF00092 [flax] [poplar] VWA von Willebrand factor type A domain
Representative CDS sequence Show only first row Show all	>Lus10027666 pacid=23151280 polypeptide=Lus10027666 locus=Lus10027666.g ID=Lus10027666.BGIv1.0 annot-version=v1.0 ATGACAACAACAGAGGATTTCGTAAGATCAGTTGAGGACGGAATCAAGCTTTCCAAGCGGCTTTATTTCGGCAAGGATAGAGCGGTAGCTCCTCCTAAGA TTCCGGTGATGATGGATAAATCTGTCACCGATGCTTTCCTCCCTAAATCACCGATGGTTTATGCTGTCATCTGCAACCCTGGTATCGTTGACAATCCCGA CATACCTAGCTACCAGCCCCACGTCCACGGCAGGTGCGACCCCCCTGCTCTTATTCCTCTTCAGATGAACCGCATCGAGCTTCAGGTTGATTGCTTCTTT GATCGTGTCTTCGTCCAAATTACGGGATCCTGGAGGGTTCACTGTGTTATGGGAAGTAAGAGCTGCGATTGCCGAATTGCTATTCCTATGGGGGAACAGG GTTCAATTCTAGGTGTCGAGGTGGAGGTTCATAGGAAATCGTATGCTACGGAAATAATCGCACTACATGACTTAAAGGGCGAGGATAAAGAACCCCGCCC TGAAAATGGAGGTTATCTCAAAAGTAACATTTTTACCGTCACAGTCCCAAAGGTTGATGGGGGTACCATACTCTCAATTAAAGCTAGTTGGATGCAGAAA TCACAATTCAGCAACGGTGAATTTTATGTTGAAGTTCCCTTCAGTTTCCCCGAGTATGTCACTCCATTTGCAAAGAAGCTACCCAAGAAAGAGAAGATAC TGCTGAATTTGAATTCTGGTTCTGCAACTGAGATTATTTGCAGAAATACCAGTCATCCTTTGAAGGAGGTCAGAAGAGAAGCTGGGAAGCTGTGTTTCGC TTATGAAACTGAAGTGCTTACTTGGACACACAATGATTTCACTTTCTCATACGCTATCCCATCAAGCAATGTATTTGGGGGTGTGCTTTTGCAAACGCCA GCTGTCCATGATACTGATCAAAGAGAGATGTTCTCTGTGTACCTTTTTCCTGGGGATCAGCAAAGCAAGAAGGTGTTTAGAAGAGAGGTTGTATTTGTTA TTGATATCAGTGGAAGCATGGAAGGAAAACCAATTCAGGCCACAAAGAACGCAATACTCATTGCTCTAGACAAGCTCGAACCAAAAGATTTATTCAATAT AATTGCATTTAATGGAGAGTGTTCTATCTTTTCATCATCGATGGAATCGGCAACAGAAAATGAAATTAACAAGGCTTCTCAATGGATCAATTCAAATTTT GTGCCCAGTGGCAGTACAAATATTTCGCAGGCCCTCAATAAGGCAATAGAAATGGTGTCCAAAAAGAGTGGTACAATACCTCTCATATTCCTTGTGACTG ATGGGACGGTTGAAGATGAAAGACATATTTGTGAAGCAATAAGAAGTGAATGTACAGATGTAAAAGAAATTGCTCCACGGATACACACTTTCGGCATAGG GATGTACTGCAATCATCATTTCTTAAGGATGCTGGCAGTTCTTTGCAGGGGAGAATATGATGCTGCTTATGAACTAGATTCTATCGAGACCAGGCTGCAA AATTTCTTCAGCAGAGCTTTGTCAACATTTCTCGCAAATACAACACTCAATGCATTGGATAATGTCCATGAACTTGAGACGTTTCCTTCTAGTCTTCCAG ACCTTTCATCCGAAGGGTTGTGGACTATTTCTGGCAGATATGTTGGAGAGGTACCTGACTCCTTTAGAGTCGAAGGTGTTTTGGGAGACATGAGTAGATT CACTGTGGACTTGAAAACACGGAACGGCAAGGACATTCCTCTGGACAAGATGTTTGCAAAGCAGCAAATTGACATTCTAACATCTAAGGCATGGTTTTCA ATTAGTAAAGAGCTAGAGGAGAAGGTTTCGAAAATGAGTGTTCAAACTGGTGTCATATCTGAATATACGCACATGTCAGTGCTAGAAACAGAGAGAGTGT ATGAAGGCACAGAACATCACGCAGGAGGACGCAAGACGTCAAAGAAAGCTAGCTCGGAGAAGGGGGAATCGGCGAGTCGGAGAAGAATAGTGTTGGCAGG AATGGGGATTGGGTTTGGTAATTTGGCAGCCACGATAGATAATACACGTCCAGGAGCGGAGGAACAAAGGTTGCCAGAGGCAGCAGAGATGATGATAAAG GCAGCATCAAACTGCTGTGGGAGGTTATACGGGGACTGCTGCTGTCTGTGCTGCATCCAGTGCTGCTCGAGGATGAATGACCAGTGCGCAATTGCCTTGA CGCAGTTCTGCACTGCTTTAGCGTGTTTCGGCTGCTTTGAGTGTTGGGCTGCCATTTGTTGTCCGGGAGAAGATGGCCAATGA
AA sequence Show only first row Show all	>Lus10027666 pacid=23151280 polypeptide=Lus10027666 locus=Lus10027666.g ID=Lus10027666.BGIv1.0 annot-version=v1.0 MTTTEDFVRSVEDGIKLSKRLYFGKDRAVAPPKIPVMMDKSVTDAFLPKSPMVYAVICNPGIVDNPDIPSYQPHVHGRCDPPALIPLQMNRIELQVDCFF DRVFVQITGSWRVHCVMGSKSCDCRIAIPMGEQGSILGVEVEVHRKSYATEIIALHDLKGEDKEPRPENGGYLKSNIFTVTVPKVDGGTILSIKASWMQK SQFSNGEFYVEVPFSFPEYVTPFAKKLPKKEKILLNLNSGSATEIICRNTSHPLKEVRREAGKLCFAYETEVLTWTHNDFTFSYAIPSSNVFGGVLLQTP AVHDTDQREMFSVYLFPGDQQSKKVFRREVVFVIDISGSMEGKPIQATKNAILIALDKLEPKDLFNIIAFNGECSIFSSSMESATENEINKASQWINSNF VPSGSTNISQALNKAIEMVSKKSGTIPLIFLVTDGTVEDERHICEAIRSECTDVKEIAPRIHTFGIGMYCNHHFLRMLAVLCRGEYDAAYELDSIETRLQ NFFSRALSTFLANTTLNALDNVHELETFPSSLPDLSSEGLWTISGRYVGEVPDSFRVEGVLGDMSRFTVDLKTRNGKDIPLDKMFAKQQIDILTSKAWFS ISKELEEKVSKMSVQTGVISEYTHMSVLETERVYEGTEHHAGGRKTSKKASSEKGESASRRRIVLAGMGIGFGNLAATIDNTRPGAEEQRLPEAAEMMIK AASNCCGRLYGDCCCLCCIQCCSRMNDQCAIALTQFCTALACFGCFECWAAICCPGEDGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19110			inter-alpha-trypsin inhibitor ...		Lus10027666 [exp]	0	1
AT5G44070		ATPCS1, ARA8, C...	CADMIUM SENSITIVE 1, ARABIDOPS...		Lus10003623 [exp]	1.0	0.8760
AT4G36980			unknown protein		Lus10019346 [exp]	3.7	0.8087
AT5G03330			Cysteine proteinases superfami...		Lus10013813 [exp]	4.6	0.7780
AT2G39920			HAD superfamily, subfamily III...		Lus10040231 [exp]	4.9	0.7806
AT1G61065			Protein of unknown function (D...		Lus10011208 [exp]	5.9	0.7897
AT2G39920			HAD superfamily, subfamily III...		Lus10002714 [exp]	7.5	0.7941
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Lus10039575 [exp]	9.8	0.8001
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10005934 [exp]	16.2	0.7755
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10019710 [exp]	21.6	0.6981
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Lus10028438 [exp]	22.9	0.7368

Compare expression of checked genes

Lus10027666 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.