Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33250 364 / 3e-129 ATTIF3K1, EIF3K eukaryotic translation initiation factor 3K (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039931 [exp] 477 / 1e-173 AT4G33250 367 / 2e-130 eukaryotic translation initiation factor 3K (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G136500 [exp] 417 / 3e-150 AT4G33250 382 / 2e-136 eukaryotic translation initiation factor 3K (.1) Potri.018G063600 [exp] 401 / 1e-143 AT4G33250 371 / 6e-132 eukaryotic translation initiation factor 3K (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF03399 [flax] [poplar] SAC3_GANP SAC3/GANP family
Representative CDS sequence Show only first row Show all	>Lus10027668 pacid=23151282 polypeptide=Lus10027668 locus=Lus10027668.g ID=Lus10027668.BGIv1.0 annot-version=v1.0 ATGGGTAGAGAAATTGAGTCTCCGAAACAACAGCCGCAGCAGCAAATCTCATACACAGTGGAGCAGCTTGTAGCCGTCAATCCCTACAATCCCGACATCC TTCCTGACCTCGAGAATTACGTCAATGAGCAGGTTGCCTCGCAAACATACAGCCTAGATGCAAATCTATGCCTTCTTCGCCTTTATCAGTTCGAGCCAGA GCGGTTGAGCAGCCAAATTGCTGTGCGCATTTTGGTTAAGGCGCTCATGGCTATGCCAGCTCCAGATTTCAGCCTTTGCCTCTTCTTGATTCCAGAAAGA GTGCAAATGGAGGAGCAGTTCAAGACACTGATTGTCCTCTCCCATTATCTTGAGACTGGGAGGTTTCGTCAGTTCTGGGATGAAGCATCTAAGAGTCGGC ATATTGTAGAAGCTGTACCAGGTTTTGAGCAAGCTATAAGAGACTATGCTGTCCATGTTCTTTCCTTGACCTACCAAAAGGTTCCTAGGACCGTTCTAGC TGAGGCCATCAACATTGAAGGTTTGTTGCTGGACAAGTTCCTTGAACAGCAAGTTGCAGAGAGTGGGTGGGTTGTAGAGAAGGGTCAAGGCAGGGCTCAA GTAATTGCACTGCCCAAAACTGAATTCAATCATCCGGAGCTAAAGAAAAACTCCAGCGATGCTGTGCCGTTGGATCATGTCACTCGCATCTTCCCGATCC TTAGCTGA
AA sequence Show only first row Show all	>Lus10027668 pacid=23151282 polypeptide=Lus10027668 locus=Lus10027668.g ID=Lus10027668.BGIv1.0 annot-version=v1.0 MGREIESPKQQPQQQISYTVEQLVAVNPYNPDILPDLENYVNEQVASQTYSLDANLCLLRLYQFEPERLSSQIAVRILVKALMAMPAPDFSLCLFLIPER VQMEEQFKTLIVLSHYLETGRFRQFWDEASKSRHIVEAVPGFEQAIRDYAVHVLSLTYQKVPRTVLAEAINIEGLLLDKFLEQQVAESGWVVEKGQGRAQ VIALPKTEFNHPELKKNSSDAVPLDHVTRIFPILS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33250		ATTIF3K1, EIF3K	eukaryotic translation initiat...		Lus10027668 [exp]	0	1
AT3G46560		TIM9, EMB2474	embryo defective 2474, Tim10/D...		Lus10038695 [exp]	1.0	0.9538
AT4G33250		ATTIF3K1, EIF3K	eukaryotic translation initiat...		Lus10039931 [exp]	3.7	0.9255
AT1G80750			Ribosomal protein L30/L7 famil...		Lus10040040 [exp]	3.9	0.9341
AT2G46230			PIN domain-like family protein...		Lus10010134 [exp]	4.9	0.9332
AT1G34030			Ribosomal protein S13/S18 fami...		Lus10014676 [exp]	4.9	0.9505
AT5G26800			unknown protein		Lus10011180 [exp]	5.5	0.9248
AT4G09800		RPS18C	S18 ribosomal protein (.1)		Lus10022057 [exp]	5.5	0.9512
AT3G02080			Ribosomal protein S19e family ...		Lus10033532 [exp]	5.7	0.9071
AT1G25260			Ribosomal protein L10 family p...		Lus10043280 [exp]	7.1	0.9295
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10002901 [exp]	7.2	0.9157

Compare expression of checked genes

Lus10027668 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.