Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05840 473 / 8e-172 PAA2 20S proteasome subunit PAA2 (.1.2) AT5G35590 462 / 1e-167 PAA1 proteasome alpha subunit A1 (.1) AT1G16470 157 / 2e-47 PAB1 proteasome subunit PAB1 (.1.2) AT1G79210 154 / 2e-46 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) AT3G51260 149 / 2e-44 PAD1 20S proteasome alpha subunit PAD1 (.1.2) AT5G66140 147 / 2e-43 PAD2 proteasome alpha subunit D2 (.1) AT1G53850 142 / 1e-41 PAE1, ATPAE1 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) AT3G14290 141 / 2e-41 PAE2 20S proteasome alpha subunit E2 (.1) AT3G22110 139 / 4e-40 PAC1 20S proteasome alpha subunit C1 (.1) AT1G47250 133 / 8e-38 PAF2 20S proteasome alpha subunit F2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039932 [exp] 496 / 2e-180 AT2G05840 458 / 1e-165 20S proteasome subunit PAA2 (.1.2) Lus10017135 [exp] 157 / 3e-47 AT1G16470 454 / 1e-164 proteasome subunit PAB1 (.1.2) Lus10036210 [exp] 156 / 5e-47 AT1G16470 450 / 3e-163 proteasome subunit PAB1 (.1.2) Lus10041890 [exp] 143 / 8e-42 AT5G66140 442 / 9e-160 proteasome alpha subunit D2 (.1) Lus10042145 [exp] 140 / 9e-41 AT3G22110 474 / 3e-172 20S proteasome alpha subunit C1 (.1) Lus10004235 [exp] 134 / 3e-39 AT3G22110 375 / 2e-134 20S proteasome alpha subunit C1 (.1) Lus10018318 [exp] 143 / 7e-39 AT2G35130 801 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10037454 [exp] 140 / 3e-38 AT1G53850 464 / 8e-163 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) Lus10003936 [exp] 140 / 4e-38 AT1G53850 463 / 9e-162 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G140400 [exp] 484 / 3e-176 AT2G05840 463 / 7e-168 20S proteasome subunit PAA2 (.1.2) Potri.016G139600 [exp] 475 / 1e-172 AT2G05840 459 / 2e-166 20S proteasome subunit PAA2 (.1.2) Potri.006G110800 [exp] 472 / 2e-171 AT2G05840 453 / 7e-164 20S proteasome subunit PAA2 (.1.2) Potri.012G123550 [exp] 158 / 6e-48 AT1G16470 456 / 1e-165 proteasome subunit PAB1 (.1.2) Potri.015G122400 [exp] 158 / 6e-48 AT1G16470 456 / 1e-165 proteasome subunit PAB1 (.1.2) Potri.009G133800 [exp] 148 / 8e-44 AT5G66140 409 / 2e-146 proteasome alpha subunit D2 (.1) Potri.004G174200 [exp] 145 / 1e-42 AT3G51260 406 / 2e-145 20S proteasome alpha subunit PAD1 (.1.2) Potri.003G072500 [exp] 143 / 5e-42 AT3G14290 464 / 1e-168 20S proteasome alpha subunit E2 (.1) Potri.001G162900 [exp] 139 / 2e-40 AT3G14290 471 / 4e-171 20S proteasome alpha subunit E2 (.1) Potri.006G008800 [exp] 139 / 3e-40 AT3G22110 452 / 1e-163 20S proteasome alpha subunit C1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [flax] [poplar] NTN PF00227 [flax] [poplar] Proteasome Proteasome subunit CL0052 [flax] [poplar] NTN PF10584 [flax] [poplar] Proteasome_A_N Proteasome subunit A N-terminal signature
Representative CDS sequence Show only first row Show all	>Lus10027669 pacid=23151290 polypeptide=Lus10027669 locus=Lus10027669.g ID=Lus10027669.BGIv1.0 annot-version=v1.0 ATGAGCCGAGGAAGTGGAGGTGGCTACGATCGCCACATTACAATCTTCTCGCCGGAAGGTCGCCTCTTCCAAGTCGAGTACGCTTTCAAGGCAGTAAAGG CGGCGACTGTCACTTCGATTGGAGTTCGAGGAAAGGACTCCGTCTGCGTTGTCACGCAGAAAAAAGTTCCTGACAAGCTTCTTGATCAAACTAGCGTAAC CCACCTTTTCCCTATCACTCAATACCTTGGATTGCTCGCGACGGGCATGACAGCTGATGCAAGGACATTGGTTCAACAAGCAAGAAATGAAGCTGCTGAG TTCCGATTCAAATATGGCTATGAAATGCCTGTCGATGTTTTGTCTAAATGGATTGCCGACAAGTCACAAGTTTACACACAGCATGCCTACATGAGACCAC TTGGAGTAGTTGCCATGGTTCTGGGTATCGATGACGAAAAGGGGCCTCAGCTTTATAAATGTGACCCAGCTGGTCACTTTTATGGTCACAAGGCTACAAG TGCTGGGTTGAAAGAACAGGAGGCTATCAATTTTCTTGAGAAGAAAATGAAAAATGACCCTGCTTTCACCTATGAGGAAACAGTGCAGACTGCGATTTCT GCTTTGCAATCTGTTCTGCAAGAAGACTTTAAGGCTACTGAGATCGAGGTGGGAGTGGTGAGAGCAGACAAGCCAGTTTTCAGGGTTTTGTCGACCGAAG AGATAGATGAACACTTGACTGCGATTAGTGAGCGCGACTGA
AA sequence Show only first row Show all	>Lus10027669 pacid=23151290 polypeptide=Lus10027669 locus=Lus10027669.g ID=Lus10027669.BGIv1.0 annot-version=v1.0 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAATVTSIGVRGKDSVCVVTQKKVPDKLLDQTSVTHLFPITQYLGLLATGMTADARTLVQQARNEAAE FRFKYGYEMPVDVLSKWIADKSQVYTQHAYMRPLGVVAMVLGIDDEKGPQLYKCDPAGHFYGHKATSAGLKEQEAINFLEKKMKNDPAFTYEETVQTAIS ALQSVLQEDFKATEIEVGVVRADKPVFRVLSTEEIDEHLTAISERD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05840		PAA2	20S proteasome subunit PAA2 (....		Lus10027669 [exp]	0	1
AT3G27430		PBB1	N-terminal nucleophile aminohy...		Lus10032102 [exp]	1.0	0.8954
AT2G05840		PAA2	20S proteasome subunit PAA2 (....		Lus10039932 [exp]	1.4	0.8870
AT5G05780		RPN8A, AE3, ATH...	ASYMMETRIC LEAVES ENHANCER 3, ...		Lus10035522 [exp]	2.0	0.8277
AT1G64520		RPN12A	regulatory particle non-ATPase...		Lus10023053 [exp]	3.6	0.7584
AT3G06050		PRXIIF, ATPRXII...	peroxiredoxin IIF (.1)		Lus10021932 [exp]	4.0	0.7858
AT2G19080			metaxin-related (.1)		Lus10020010 [exp]	4.2	0.7935
AT2G19730			Ribosomal L28e protein family ...		Lus10006869 [exp]	4.9	0.8350
AT3G66654			Cyclophilin-like peptidyl-prol...		Lus10016265 [exp]	5.9	0.8080
AT2G19080			metaxin-related (.1)		Lus10015535 [exp]	7.0	0.7932
AT1G06890			nodulin MtN21 /EamA-like trans...		Lus10024194 [exp]	10.4	0.7371

Compare expression of checked genes

Lus10027669 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.