Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15470 602 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT5G54200 597 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT2G37670 386 / 8e-122 Transducin/WD40 repeat-like superfamily protein (.1) AT5G02430 375 / 1e-117 Transducin/WD40 repeat-like superfamily protein (.1) AT5G24320 254 / 2e-74 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G53500 250 / 3e-73 Transducin/WD40 repeat-like superfamily protein (.1) AT5G42010 246 / 3e-71 Transducin/WD40 repeat-like superfamily protein (.1) AT1G64610 243 / 1e-70 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G48870 209 / 2e-58 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 62 / 5e-10 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039934 [exp] 1200 / 0 AT5G54200 691 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10003974 [exp] 406 / 3e-128 AT2G37670 837 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024399 [exp] 403 / 1e-127 AT2G37670 850 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032436 [exp] 284 / 4e-85 AT5G24320 516 / 1e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10017312 [exp] 283 / 5e-85 AT1G64610 439 / 4e-146 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023033 [exp] 278 / 1e-82 AT5G24320 508 / 3e-171 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10003206 [exp] 259 / 2e-76 AT1G64610 427 / 1e-141 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10020846 [exp] 226 / 1e-64 AT1G48870 407 / 3e-135 Transducin/WD40 repeat-like superfamily protein (.1) Lus10033525 [exp] 218 / 6e-62 AT1G48870 400 / 1e-132 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G403400 [exp] 735 / 0 AT3G15470 828 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G122500 [exp] 700 / 0 AT3G15470 835 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G084600 [exp] 414 / 6e-132 AT2G37670 920 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G174100 [exp] 329 / 9e-102 AT5G53500 523 / 1e-177 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G009700 [exp] 296 / 1e-89 AT5G24320 621 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G144400 [exp] 293 / 3e-88 AT5G24320 516 / 4e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G086600 [exp] 285 / 4e-85 AT5G24320 514 / 1e-173 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G018200 [exp] 270 / 7e-80 AT5G24320 606 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G110500 [exp] 237 / 3e-68 AT5G24320 411 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.005G057600 [exp] 231 / 2e-66 AT5G24320 384 / 3e-124 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10027671 pacid=23151189 polypeptide=Lus10027671 locus=Lus10027671.g ID=Lus10027671.BGIv1.0 annot-version=v1.0 ATGAACAAACCCATCCACAAAGGCTTTGGCGAAGATGACGACAGCGAGGCCGACCAATTCTACGAATCCCTGGATCGCATTGCGGCCTCCACTTCCTGCT CTACTTCCAATTCCGACGACTCTGATCCCGACCCTCCTCAATTCTCCAACTACGACCTTTGGATCTCCGAACCTTCTTCCGTCTCCGAACGCCGCCGCAC TCTCCTCCGCCACATGGGTCTCTCCTACGACTCTTCCCTCTCCCGCCCCCTTGCTCCTCCAGATTTCAACTTCACTCCTCGATTCCTCGCTTCCAACATT CCTGGGGTTTCCCGATCCAAATCTGACAGCGGAATCGATCGCAGGGATGATGACTATCACACTGCCGCCTCTCCTCCTCTTACCACTGCTTGTAATCATG ATTTCAATCCCTTTTCTTCTTCTTTTCCTTCTTCAATTCTTTCCGGCGATGTAAATAGCTATAGCACCAATCAGAATGACAAGACAGTTGTTGTAGCCGC CAACTCCGAGAAGAATGCTTCTGTTGTTGGTGGCTCAAAGCACACAAATCGTTCTTCTTCTTCCCCCAAGTTTTCTGCTACTGCTTCCCCAAGTAAGCCT CCTTCTGGAAAACATGGGAAGAGCATGGATGTAACCAGGAGTTTCTCAAACACCAGCATTAGGGAGCTTGAGGAAGGTGTGTCGGATTGTCCTGTGCATG ATACTGAAGCTGTAGAGCTAGCCCAGGGGTGTACAATTAAGAATCTCGATACTGGGAGAGAGTTTGTTGTTAATGAGATCAGGGAAGATGGGATGTGGAA CAAGTTGAAAGAAGTGGGAACTGGTAGGCAGCTCACAATGGAGGAGTTTGAAATGACTGTGGGTCATTCACCTATCGTGCAAGAACTGATGAGAAGACAG AGCGTGGAAGATGGTACTAGAGAAAATCACGACTCCAATTGTAACGGGGGTAATGGAACAGCAGGGTCGAAGCTGAAAAAGAAAGGTGGTTGGTTGAGAA GTATAAAAAACGTAGCAAGTAGTGTGAAAGGGCATAAGGAGAGAAGTAGTGATGAGAAGGACACTGGATCCGAGAGAGGAGGTAGGAGATCAAGTTCAGC TACTGATGATAGCCAAGATGTTTCTTTTCACGGGCCAGAGAGAGTGCGTGTAAAGCAATATGGCAAGTCATTTAAAGAGTTGACTGCAGTATATAAAAGT CAGGAGATTCAGGCTCATACTGGCTCTATTTGGGCTATTAAGTTTAGTCTGGACGGTAGATATTTGGCGAGTGCAGGCGAGGATTGTGTGATACATGTTT GGCAGGTGGTTGAATCAGAAAGGAAAGGAGAGTTGTTGCTGGAAAAGCCGGAAGATGCAAACTTCAATATGCTAGTAACACTAAATGGGTCTCCTGAACC TATGTTCTTGTCAACCTCGGCTGATGGTCATAATGAAAAGAGGAGAAGAGGGAGGTCATCATTAAGCAGAAAATCATTGAGCTTGGAACACATCATTGTA CCTGAAACTGTATTTGCGCTGACAGATAAACCAATTTGCTCATTTGAAGGACATATAGATGACGTCCTCGACTTATCGTGGTCCAAATCTCAGGATATTA TAATGACAATTGCTCTGGAGGGTGCTCACAGCTTTCTGTTGTCTGATCTTCAGCACCTGCTTTCTTCATCAATGGACAAAACAGTGCGCCTTTGGCACTT ATCTAGCAAGACATGTTTGAAGATATTCTCGCACAGTGATTATGTCACATGCATCCAGTTCAATCCTGTTGATGATAGATACTTCATCAGTGGGTCTCTG GATTCAAAGGTTCGTATATGGAGTATTCCTGATCGTCAAGTTGTTGATTGGAATGATGTACATGAGATGGTCACTGCTGCTTGCTACACTCCAGATGGTC AGGGTGCACTAGTTGGTTCATATAAAGGAGGCTGCCGGCTTTACAACACATCTGAGAACAAGTTGCTGCAAAAATGTCAAATCAATCTGCAGAATAAGAA GAAGAAATCTCATCTGAAGAAAATTACAGGGTTTCAGTTTGTACCTGGAAGCTCTTCCGAAGTGCTCATCACTTCTGCTGATTCTCGGATACGGGTCATT GATCGTACCGATTTGGTTCACAAGTTCAAAGAGCACAAACTTCCAGGGTGTAAACCAACAGAAAATAACCATCTGAGTCGCAGTAATGATTAG
AA sequence Show only first row Show all	>Lus10027671 pacid=23151189 polypeptide=Lus10027671 locus=Lus10027671.g ID=Lus10027671.BGIv1.0 annot-version=v1.0 MNKPIHKGFGEDDDSEADQFYESLDRIAASTSCSTSNSDDSDPDPPQFSNYDLWISEPSSVSERRRTLLRHMGLSYDSSLSRPLAPPDFNFTPRFLASNI PGVSRSKSDSGIDRRDDDYHTAASPPLTTACNHDFNPFSSSFPSSILSGDVNSYSTNQNDKTVVVAANSEKNASVVGGSKHTNRSSSSPKFSATASPSKP PSGKHGKSMDVTRSFSNTSIRELEEGVSDCPVHDTEAVELAQGCTIKNLDTGREFVVNEIREDGMWNKLKEVGTGRQLTMEEFEMTVGHSPIVQELMRRQ SVEDGTRENHDSNCNGGNGTAGSKLKKKGGWLRSIKNVASSVKGHKERSSDEKDTGSERGGRRSSSATDDSQDVSFHGPERVRVKQYGKSFKELTAVYKS QEIQAHTGSIWAIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLLEKPEDANFNMLVTLNGSPEPMFLSTSADGHNEKRRRGRSSLSRKSLSLEHIIV PETVFALTDKPICSFEGHIDDVLDLSWSKSQDIIMTIALEGAHSFLLSDLQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSL DSKVRIWSIPDRQVVDWNDVHEMVTAACYTPDGQGALVGSYKGGCRLYNTSENKLLQKCQINLQNKKKKSHLKKITGFQFVPGSSSEVLITSADSRIRVI DRTDLVHKFKEHKLPGCKPTENNHLSRSND

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54200			Transducin/WD40 repeat-like su...		Lus10027671 [exp]	0	1
AT5G54200			Transducin/WD40 repeat-like su...		Lus10039934 [exp]	1.4	0.9486
AT1G60070			Adaptor protein complex AP-1, ...		Lus10012988 [exp]	4.9	0.9192
AT5G16720			Protein of unknown function, D...		Lus10004050 [exp]	5.5	0.8846
AT3G26370			O-fucosyltransferase family pr...		Lus10036875 [exp]	8.0	0.8769
AT1G61850			phospholipases;galactolipases ...		Lus10018349 [exp]	8.1	0.9021
AT2G27900			unknown protein		Lus10009613 [exp]	9.4	0.8937
AT4G32120			Galactosyltransferase family p...		Lus10001954 [exp]	12.0	0.8756
AT1G47380			Protein phosphatase 2C family ...		Lus10021737 [exp]	13.5	0.8196
					Lus10029084 [exp]	15.4	0.8099
AT1G64650			Major facilitator superfamily ...		Lus10033228 [exp]	17.5	0.8602

Compare expression of checked genes

Lus10027671 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.