Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62810 338 / 9e-111 ATPEX14, PED2, PEX14 PEROXISOME DEFECTIVE 2, peroxin 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039936 [exp] 413 / 3e-143 AT5G62810 208 / 3e-64 PEROXISOME DEFECTIVE 2, peroxin 14 (.1) Lus10039935 [exp] 264 / 3e-86 AT5G62810 64 / 2e-12 PEROXISOME DEFECTIVE 2, peroxin 14 (.1) Lus10002377 [exp] 261 / 3e-83 AT5G62810 199 / 5e-60 PEROXISOME DEFECTIVE 2, peroxin 14 (.1) Lus10042119 [exp] 224 / 3e-67 AT5G62810 191 / 2e-55 PEROXISOME DEFECTIVE 2, peroxin 14 (.1) Lus10002378 [exp] 198 / 1e-59 AT5G62810 115 / 2e-29 PEROXISOME DEFECTIVE 2, peroxin 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G080800 [exp] 460 / 6e-158 AT5G62810 330 / 3e-107 PEROXISOME DEFECTIVE 2, peroxin 14 (.1) Potri.015G076100 [exp] 434 / 7e-148 AT5G62810 316 / 4e-102 PEROXISOME DEFECTIVE 2, peroxin 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04695 [flax] [poplar] Pex14_N Pex14 N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10027672 pacid=23151297 polypeptide=Lus10027672 locus=Lus10027672.g ID=Lus10027672.BGIv1.0 annot-version=v1.0 ATGGCGAGTGGATCCTCGTCTCCTCGCGATCCTCTGCCCTCCGGTGGAAATCCTCACAATTCAGCTAGTGAAGCTGTGTTACCAGCTACTGAGATTAATG AAGATGCCAAACCACCGAATCCCCAGTCCGTCTTTGTGAATTCAGAACCAATACGAGAAGACCAAGTACGGAATGCTGTGAACTTCCTTTCTCACCCGAA AGTTAGGAGTTCTGCAGTCATCTACAGAAGATCTTTTCTCGAGAAGAAGGGACTTACAAAAGAAGAAATTGATGAAGCTTTTCGACGTGTGCCAGATCCG CTACCCAGTGCTCAGACAATTGGCACCAATCAAGAGGGGCAGGAATCAACATCAAACAGTCAGCCAAGAGTTTTTGCAGAAACCCCACAACCAGTGCCAA CTGGACTCAGTGTTGGGAATTCCTCACTCGTGACCTTGGCTCGGTCTCGATTTCATTGGTACCATGCTGTTTGTGCAGTTGGATTGCTAGCGGCCTCTGG TGCTGGAACTGTTATATGGATTAAGAAGTCCATGATTCCTCGGTTGAAATATTGGATACGTAAAGTTGTTTGGGAAGAGAAAGATGGTAACGGAAAATTA AGTTTGGTTGAAGAAGCTGCAGCAGCTGTGAAAGCGACTGCCGCGGCTGCTACTGAGGTTGCAAAGACAAGCCAAGATTTGATAGTTTCAAGAAGTGAAG AGAAAGCATACATGGAGAACTTGATGAATTTGTTAGATTTGCAAGTAAAGGAAATGAGGTCAATGAGCAATGCCATACAACGACTGGAAGGGACAGCTGA TAACATTAGAAGAACACATCTGTTGGAACATGGAGATTACAGTGCTCCAATTACAGATCTTAAGCAACCGCATGTAAATGGTAAACTGGAGATTGAGCCA CGTTCAGCAATATCTTCACCGCCCACTTCTACAGAACCATCTGTTGCACCACACCCTAAGTCATATATGGAGATAATGGCAATGATTCAAAGGGGAGAGA GACCTCCAAACATCAGAGATATAAATGATCAACCCCCGAACCCTAATCAGCAAATTTCAAAACCTCGCTTGGCACCGAGGTCTAAGCCGTGGGAGGGTAA CGAAGCCAAACCCATGTCAAGAGGATTTGTTGCTTCAGTGAATGGGGAAGGTTTGGAGGACTTGGGTGCTCAGAAGAACAATGGAGTGAGCTATCAGCTG GATGGGGAGAGCACTGTGGTACCTTGGTGGCAGAAGAAGAACGCCAGAAAAACTGAGCCTGATAATGAGGAAGCGAAACCAGTTCCTGCCATCACACAGC CCCTTGAGCAACCAATTCAGCGGAGTTGGGTGCCTCCCCAACCACCACCTATTGCAATGCCCGAAGCAGCAGAAGCGATTCGGCGAGCAAAGCCCAGGAA AGAGACATTGGCAGACGATCAGTCTGTCTCTCAGCTGCAGCCAACTGAGGCAATAGATGAGCTGCAAAGGGTTACAAAGATATCTGAATCCGGAGGTGAA GTAGAAATCCAGAGTGGAGGACCAGAGACGAATGGAGAGTCTTCAACGGGGTTAAAGGTGATTGAGATTGAAGAAGAATCCCAACAGATGTAA
AA sequence Show only first row Show all	>Lus10027672 pacid=23151297 polypeptide=Lus10027672 locus=Lus10027672.g ID=Lus10027672.BGIv1.0 annot-version=v1.0 MASGSSSPRDPLPSGGNPHNSASEAVLPATEINEDAKPPNPQSVFVNSEPIREDQVRNAVNFLSHPKVRSSAVIYRRSFLEKKGLTKEEIDEAFRRVPDP LPSAQTIGTNQEGQESTSNSQPRVFAETPQPVPTGLSVGNSSLVTLARSRFHWYHAVCAVGLLAASGAGTVIWIKKSMIPRLKYWIRKVVWEEKDGNGKL SLVEEAAAAVKATAAAATEVAKTSQDLIVSRSEEKAYMENLMNLLDLQVKEMRSMSNAIQRLEGTADNIRRTHLLEHGDYSAPITDLKQPHVNGKLEIEP RSAISSPPTSTEPSVAPHPKSYMEIMAMIQRGERPPNIRDINDQPPNPNQQISKPRLAPRSKPWEGNEAKPMSRGFVASVNGEGLEDLGAQKNNGVSYQL DGESTVVPWWQKKNARKTEPDNEEAKPVPAITQPLEQPIQRSWVPPQPPPIAMPEAAEAIRRAKPRKETLADDQSVSQLQPTEAIDELQRVTKISESGGE VEIQSGGPETNGESSTGLKVIEIEEESQQM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10027672 [exp]	0	1
AT4G14230			CBS domain-containing protein ...		Lus10034024 [exp]	2.4	0.7820
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10014176 [exp]	3.5	0.8094
AT2G17200		DSK2	ubiquitin family protein (.1)		Lus10023934 [exp]	5.5	0.7846
AT5G15880			unknown protein		Lus10034091 [exp]	5.7	0.7705
AT5G18610			Protein kinase superfamily pro...		Lus10040350 [exp]	6.5	0.7663
AT2G21270		UFD1	ubiquitin fusion degradation 1...		Lus10042053 [exp]	6.7	0.7523
AT3G12570		FYD	FYD (.1.2.3.4)		Lus10023420 [exp]	7.1	0.7111
AT5G65000			Nucleotide-sugar transporter f...		Lus10026182 [exp]	7.5	0.7657
AT5G60710			Zinc finger (C3HC4-type RING f...		Lus10016102 [exp]	14.5	0.7009
AT2G17030			F-box family protein with a do...		Lus10023984 [exp]	15.2	0.7685

Compare expression of checked genes

Lus10027672 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.