Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65420 194 / 5e-63 NPQ7 NONPHOTOCHEMICAL QUENCHING 7, Protein of unknown function (DUF565) (.1) AT3G56830 102 / 4e-27 Protein of unknown function (DUF565) (.1), Protein of unknown function (DUF565) (.2), Protein of unknown function (DUF565) (.3) AT5G43050 40 / 0.0003 NPQ6 NONPHOTOCHEMICAL QUENCHING 6, Protein of unknown function (DUF565) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039937 [exp] 280 / 4e-97 AT1G65420 200 / 3e-66 NONPHOTOCHEMICAL QUENCHING 7, Protein of unknown function (DUF565) (.1) Lus10030290 [exp] 88 / 7e-22 AT3G56830 151 / 8e-47 Protein of unknown function (DUF565) (.1), Protein of unknown function (DUF565) (.2), Protein of unknown function (DUF565) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G076900 [exp] 206 / 3e-67 AT1G65420 229 / 2e-76 NONPHOTOCHEMICAL QUENCHING 7, Protein of unknown function (DUF565) (.1) Potri.002G146000 [exp] 102 / 6e-27 AT3G56830 171 / 3e-53 Protein of unknown function (DUF565) (.1), Protein of unknown function (DUF565) (.2), Protein of unknown function (DUF565) (.3) Potri.012G134700 [exp] 39 / 0.0008 AT5G43050 212 / 1e-71 NONPHOTOCHEMICAL QUENCHING 6, Protein of unknown function (DUF565) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04483 [flax] [poplar] DUF565 Protein of unknown function (DUF565)
Representative CDS sequence Show only first row Show all	>Lus10027674 pacid=23151293 polypeptide=Lus10027674 locus=Lus10027674.g ID=Lus10027674.BGIv1.0 annot-version=v1.0 ATGGGATTAATTATGCTGCAGAGGATGCAGCCTGGTTTGTTAAAAATCCCAGAGAGAAACCTATCTCCTTGTGCATTGCAGAGCTTCAACTATGGACTTC TCCCGACTAGAAAGTTTCCACCTTTTCCAAGAGTGCCTATGGATGCAAGTCTTTTCCTCCTCTTTGTGGAACATAACTGTAGGATTCGGATTATGAGACT AGCTAGACACAGGAGGTGCTGGAGCATAGCGATGGCCTTAAATGCAGGTGGCGGATTACCTGGAAACGAACAGCAGAACCTGAATGACGGTGATGGTTCG GGATTGGAGGGTACTCGGCTGGGCAGGATAGTGAGTGCAGGTGGGAGGCAGCTGCTGGATAAGCTAAATTCAGCGAGGAAGAACTTTCCCACCAAAGTTT TTCTGCTGCTCTTAGGGTTCTATACCGCAAATGCCTTGGCTACAATACTCGGACAGACCGGTGATTGGGATGTGTTAGTTGCTGGTATTGTGGTGGCCGC ATTTGAAGGGATTGGGATGCTCATGTACAGAAACAGACAGACTAGTTCGGGTTCCCCTTCCTTGTCTGAAGGGAGGTTCAAGTCTTTCGTGTTGATGGTT AACTATTGGAAAGCCGGTGTTTGTTTAGGACTCTTTGTAGATGCTTTTAAGCTGGGCAGTTAA
AA sequence Show only first row Show all	>Lus10027674 pacid=23151293 polypeptide=Lus10027674 locus=Lus10027674.g ID=Lus10027674.BGIv1.0 annot-version=v1.0 MGLIMLQRMQPGLLKIPERNLSPCALQSFNYGLLPTRKFPPFPRVPMDASLFLLFVEHNCRIRIMRLARHRRCWSIAMALNAGGGLPGNEQQNLNDGDGS GLEGTRLGRIVSAGGRQLLDKLNSARKNFPTKVFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAFEGIGMLMYRNRQTSSGSPSLSEGRFKSFVLMV NYWKAGVCLGLFVDAFKLGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65420		NPQ7	NONPHOTOCHEMICAL QUENCHING 7, ...		Lus10027674 [exp]	0	1
AT3G53500		RSZ32, RS2Z32, ...	arginine/serine-rich zinc knuc...		Lus10009067 [exp]	2.6	0.8919
AT5G64680			unknown protein		Lus10011265 [exp]	2.8	0.8753
AT1G65420		NPQ7	NONPHOTOCHEMICAL QUENCHING 7, ...		Lus10039937 [exp]	3.9	0.8673
AT1G62310			transcription factor jumonji (...		Lus10002052 [exp]	5.0	0.8009
AT4G14385			unknown protein		Lus10033887 [exp]	5.8	0.7939
AT1G10890			unknown protein		Lus10043141 [exp]	6.0	0.8644
AT3G61350		SKIP4	SKP1 interacting partner 4 (.1...		Lus10017821 [exp]	9.5	0.7971
AT5G09225			unknown protein		Lus10020870 [exp]	9.9	0.8175
AT5G22620			phosphoglycerate/bisphosphogly...		Lus10009404 [exp]	10.5	0.8408
AT5G57700			BNR/Asp-box repeat family prot...		Lus10006994 [exp]	13.0	0.8390

Compare expression of checked genes

Lus10027674 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.