Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62930 414 / 2e-148 SGNH hydrolase-type esterase superfamily protein (.1) AT5G45920 244 / 2e-81 SGNH hydrolase-type esterase superfamily protein (.1) AT2G38180 172 / 2e-52 SGNH hydrolase-type esterase superfamily protein (.1) AT3G11210 169 / 6e-52 SGNH hydrolase-type esterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000525 [exp] 239 / 2e-79 AT5G45920 337 / 4e-118 SGNH hydrolase-type esterase superfamily protein (.1) Lus10039938 [exp] 220 / 5e-74 AT5G62930 180 / 1e-58 SGNH hydrolase-type esterase superfamily protein (.1) Lus10004815 [exp] 179 / 9e-56 AT3G11210 323 / 3e-112 SGNH hydrolase-type esterase superfamily protein (.1) Lus10028290 [exp] 177 / 7e-55 AT3G11210 402 / 2e-143 SGNH hydrolase-type esterase superfamily protein (.1) Lus10013941 [exp] 173 / 2e-54 AT5G45920 257 / 1e-87 SGNH hydrolase-type esterase superfamily protein (.1) Lus10040197 [exp] 171 / 3e-52 AT3G11210 402 / 5e-143 SGNH hydrolase-type esterase superfamily protein (.1) Lus10035506 [exp] 140 / 2e-39 AT3G11210 244 / 7e-79 SGNH hydrolase-type esterase superfamily protein (.1) Lus10027790 [exp] 107 / 3e-27 AT2G38180 194 / 1e-59 SGNH hydrolase-type esterase superfamily protein (.1) Lus10013940 [exp] 73 / 5e-17 AT5G45920 80 / 3e-20 SGNH hydrolase-type esterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G081900 [exp] 411 / 2e-147 AT5G62930 403 / 3e-144 SGNH hydrolase-type esterase superfamily protein (.1) Potri.011G063800 [exp] 241 / 3e-80 AT5G45920 357 / 6e-126 SGNH hydrolase-type esterase superfamily protein (.1) Potri.004G053800 [exp] 227 / 5e-75 AT5G45920 329 / 3e-115 SGNH hydrolase-type esterase superfamily protein (.1) Potri.008G068000 [exp] 187 / 3e-59 AT3G11210 419 / 5e-150 SGNH hydrolase-type esterase superfamily protein (.1) Potri.006G100300 [exp] 181 / 2e-56 AT3G11210 327 / 8e-114 SGNH hydrolase-type esterase superfamily protein (.1) Potri.016G115800 [exp] 176 / 1e-54 AT3G11210 307 / 4e-106 SGNH hydrolase-type esterase superfamily protein (.1) Potri.016G116000 [exp] 176 / 1e-54 AT3G11210 306 / 1e-105 SGNH hydrolase-type esterase superfamily protein (.1) Potri.010G189300 [exp] 174 / 4e-54 AT3G11210 414 / 4e-148 SGNH hydrolase-type esterase superfamily protein (.1) Potri.016G116100 [exp] 169 / 4e-52 AT3G11210 337 / 9e-118 SGNH hydrolase-type esterase superfamily protein (.1) Potri.016G115900 [exp] 42 / 4e-05 AT3G11210 58 / 2e-11 SGNH hydrolase-type esterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10027675 pacid=23151307 polypeptide=Lus10027675 locus=Lus10027675.g ID=Lus10027675.BGIv1.0 annot-version=v1.0 ATGAGGCCGCAGATCATCCTGTTTGGAGATTCAATTACCGAGCAATCTTTCAGATCAGGTGGCTGGGGTGCATCTCTCGCCGACTCTTACTCTCGCAAGG CTGATGTGTTTAATCGTGGCTATGGCGGTTACAACACCAGATGGGCTTTGTTCTTGCTCAATCACCTCTTCCCAATTGATGCAAGGAAGCCTCCAGTTGC CGTCACTGTTTTCTTTGGGGCTAATGATGCTGCTCTTTTGGGTAGAACTAGTGAAAGACAGCATGTTCCTCTCGATGAATATACAGACAACCTCAGGAAA GTGGTCAAACATTTGAAGGACTGCTCGCCTACCATGCTAGTGGTGCTTATCACTCCCCCACCGGTAGATGAGCCAGGGCGCAAAGCATATGCCATATCGA TGTATGGCGAGAAAGCTATGGAACTGCCTGAGAGGACAAATGAAATGACTGGAGTCTATGCATGGCATTGCGTTGAGTTAGCCAAGGAACTGGGAGTGCT CTCCATTAATTTATGGTCCAAAATGCAGGAAACTGAAGGCTGGCAGAAAAAATACCTGAGCGATGGCCTCCACTTGACACCTGAAGGAAATGCAGTGGTG TTCCAGGAAGTAACAAAAGCGTTTAGCGAAGCTTGGCTGTCTCCTGCAGAAATGCCATTTGATTTCCCTCACCATTCTCATATTGACGGGAAGAACCCGG AAAAAGCTTTCGATCAGCCATGCTTGTAG
AA sequence Show only first row Show all	>Lus10027675 pacid=23151307 polypeptide=Lus10027675 locus=Lus10027675.g ID=Lus10027675.BGIv1.0 annot-version=v1.0 MRPQIILFGDSITEQSFRSGGWGASLADSYSRKADVFNRGYGGYNTRWALFLLNHLFPIDARKPPVAVTVFFGANDAALLGRTSERQHVPLDEYTDNLRK VVKHLKDCSPTMLVVLITPPPVDEPGRKAYAISMYGEKAMELPERTNEMTGVYAWHCVELAKELGVLSINLWSKMQETEGWQKKYLSDGLHLTPEGNAVV FQEVTKAFSEAWLSPAEMPFDFPHHSHIDGKNPEKAFDQPCL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62930			SGNH hydrolase-type esterase s...		Lus10027675 [exp]	0	1
AT1G30630			Coatomer epsilon subunit (.1)		Lus10023385 [exp]	3.6	0.7983
AT4G31250			Leucine-rich repeat protein ki...		Lus10026988 [exp]	4.9	0.7253
AT5G36290			Uncharacterized protein family...		Lus10020195 [exp]	6.9	0.7560
AT5G64130			cAMP-regulated phosphoprotein ...		Lus10036768 [exp]	7.5	0.7456
AT3G52710			unknown protein		Lus10022708 [exp]	9.8	0.7596
AT4G08520			SNARE-like superfamily protein...		Lus10037624 [exp]	12.0	0.7533
AT1G01430		TBL25	TRICHOME BIREFRINGENCE-LIKE 25...		Lus10005952 [exp]	14.4	0.7890
AT5G11540			D-arabinono-1,4-lactone oxidas...		Lus10038620 [exp]	18.9	0.7578
AT1G77580			Plant protein of unknown funct...		Lus10010888 [exp]	19.4	0.7937
AT5G26667		PYR6	P-loop containing nucleoside t...		Lus10033733 [exp]	20.1	0.7649

Compare expression of checked genes

Lus10027675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.