Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51940 320 / 1e-100 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT3G21630 251 / 5e-75 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT1G61860 207 / 1e-60 Protein kinase superfamily protein (.1) AT3G24790 205 / 2e-60 Protein kinase superfamily protein (.1) AT2G01820 215 / 8e-60 CYCJ18 Leucine-rich repeat protein kinase family protein (.1) AT3G23750 212 / 8e-59 Leucine-rich repeat protein kinase family protein (.1) AT5G18610 203 / 4e-58 Protein kinase superfamily protein (.1.2) AT4G13190 200 / 4e-58 Protein kinase superfamily protein (.1) AT1G24030 199 / 4e-58 Protein kinase superfamily protein (.1.2) AT3G02810 203 / 8e-58 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004625 [exp] 503 / 1e-171 AT1G51940 347 / 7e-111 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10026689 [exp] 501 / 3e-171 AT1G51940 348 / 4e-111 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10037586 [exp] 322 / 5e-101 AT1G51940 807 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10006841 [exp] 320 / 3e-100 AT1G51940 812 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10035301 [exp] 259 / 6e-78 AT3G21630 578 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10030022 [exp] 251 / 2e-75 AT3G21630 692 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10035302 [exp] 251 / 3e-72 AT3G21630 706 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10040050 [exp] 204 / 1e-59 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Lus10029187 [exp] 202 / 6e-59 AT1G24030 582 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G081601 [exp] 566 / 0 AT1G51940 337 / 5e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.T125208 [exp] 563 / 0 AT1G51940 336 / 9e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G187500 [exp] 526 / 0 AT1G51940 362 / 7e-117 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.001G190200 [exp] 324 / 3e-102 AT1G51940 824 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.006G252600 [exp] 323 / 3e-102 AT1G51940 326 / 4e-103 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.014G156400 [exp] 248 / 6e-74 AT3G21630 678 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.002G226600 [exp] 248 / 1e-73 AT3G21630 697 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.011G010000 [exp] 246 / 4e-73 AT3G21630 673 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.004G084000 [exp] 216 / 4e-60 AT1G66150 730 / 0.0 transmembrane kinase 1 (.1) Potri.002G241600 [exp] 206 / 4e-60 AT3G07070 543 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10027677 pacid=23151215 polypeptide=Lus10027677 locus=Lus10027677.g ID=Lus10027677.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCAAATCATCTTTTTTACTTCTCCTTCTTCTTTCCCCTCTTTCTCACCATCCTTCTCTCCAAAGCTCAACCCTACAACGGTACGTTCGCTT GCTCCGATTATTCAATCCCTTCCTGCCATTCCTATCTATACTACCCTTCTTCCTCCCTAAACTTTGATTCCGTGGATTCCAAATATCGAATTGCTTCCAT CTACTCCGTGAGCAACTCCAGCGTCGAGCCCATTACCCATCACGACCACAAACAAGGCTACCTCGTCTCTGTTCCTTGCTCCTGCCGAGAGAACCGGAGA TACCCACGTGGTAATTTTTACTCTTACGATTTTTTTTCCACCGTCGATAACTCGACCAAGGACCTCGTTCCTGAAAATGGGCGGCCATTAATCGCGGGAG AAAGACTCGGAATTGATCTCCCTTGCGGCTGCTCTCAGGATGACTCGGTCGACATTTTGACTTACACTGTTCAACCGAACGAGACGTTGACTTGGATTGC TGAGCTTCTATCAGTTAAAGAGATGGATATTGTCAGTCTAAACGGAGGATTGACTGAGCATCAGAGATTTATAGATGAGGAAAGGGTACTTTTCGTTCCA ATGAAGAAAAGAGGAACAAATAAAAAACAAAGTAGGCATGGAAGAACATACTATGTGGGGATAGGACTGTTGGGGATCGGCTTATTATTTGTGAGCTCAT TGGGATTTGCTATTCTCAAAAGGAAAATATTATTAGCTCCTCCTGATTGTAAACAACAGGAATCTGCTGTTCCTGCAAAGAAGGATATTGAAGCATGTAG AAGCACTTCAAAACTGTCCTTGCTGACTTACTTCCAAAACCATGATTTTGAAGAAGTGATATTGGAATCTGAGAGGCCTAGGGTATATACGGTGAAGGAG ATTGATGATGGGACGAATGGCTTCGACGAGAGCAGGATCATTGGAGAGGGTGGCTATGGAAAGGTCTACTTTGGCATTCTGGGAGGAAAGGAAGTTGCAA TCAAGAGGATGAAATCAAGCAGCTTACATGAGTTCTTCGCGGAGCTAAAAGCCTTGTGCAAAGTTAATCACATCAATGTGGTGGAACTACTGGGATATGC AAGTGAAGAAAACTTTCTCTACTTGGTCTATGAGTACCTCCCCAATGGGTCACTTAGTGACCATCTCCATAATCCTCTATTCAGAGGTCATGCTCCCCTT TCATGGACGGCCCGAGCACAAATAGCATTAGATGCAGCTAAAGGGATTGAGTACATTCATGATCATACAAAGGCACAGTATGTGCACCGTGATATTAAAA CTTCCAACATCCTTCTTGATCGAGGACTTAGGGCTAAGGTTGCAGATTTTGGGTTGACGATGCTGATGGAGAGATCGAATGATGAAGAATCCTTGGTCGA GACTCGATTGATTGGAACAATGGGTTATATGGCTCCAGAATCAGTGCGTGAACTCCAAATAACAACCAAGAGTGATGTATTTGCATTCGGAGTCGTTCTG GCAGAGCTTGTGACTGCTCAGAATGCAGTAGTGATGGACCACCTGGAACCGACTAGGATAAAGTCCTTGGCGATTACTATTATAAATATCTTTCGGAACC GGCACCCGGAGATGGCTCTTGAAACAATCATAGATAGTAATCTGAGGAGAAGCAGCCCCTTGCAAGAAGTACACAAGATGGCAGAGGTATCAAGGTGGTG TCTAAATGAAGAGCCGTTGAGTAGGCCGGAGATGGGAGAAGTTGTGCAGATACTGACCCAGATTTTGAAATCTTCGGTGGAATGGGAAGCATCGCTTGGA GGAAGCAGCCAGGTTTTCTCCGGACTTGACATTGGCAGATGA
AA sequence Show only first row Show all	>Lus10027677 pacid=23151215 polypeptide=Lus10027677 locus=Lus10027677.g ID=Lus10027677.BGIv1.0 annot-version=v1.0 MASSNHLFYFSFFFPLFLTILLSKAQPYNGTFACSDYSIPSCHSYLYYPSSSLNFDSVDSKYRIASIYSVSNSSVEPITHHDHKQGYLVSVPCSCRENRR YPRGNFYSYDFFSTVDNSTKDLVPENGRPLIAGERLGIDLPCGCSQDDSVDILTYTVQPNETLTWIAELLSVKEMDIVSLNGGLTEHQRFIDEERVLFVP MKKRGTNKKQSRHGRTYYVGIGLLGIGLLFVSSLGFAILKRKILLAPPDCKQQESAVPAKKDIEACRSTSKLSLLTYFQNHDFEEVILESERPRVYTVKE IDDGTNGFDESRIIGEGGYGKVYFGILGGKEVAIKRMKSSSLHEFFAELKALCKVNHINVVELLGYASEENFLYLVYEYLPNGSLSDHLHNPLFRGHAPL SWTARAQIALDAAKGIEYIHDHTKAQYVHRDIKTSNILLDRGLRAKVADFGLTMLMERSNDEESLVETRLIGTMGYMAPESVRELQITTKSDVFAFGVVL AELVTAQNAVVMDHLEPTRIKSLAITIINIFRNRHPEMALETIIDSNLRRSSPLQEVHKMAEVSRWCLNEEPLSRPEMGEVVQILTQILKSSVEWEASLG GSSQVFSGLDIGR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51940			protein kinase family protein ...		Lus10027677 [exp]	0	1
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10038454 [exp]	2.0	0.7066
AT5G02260		ATHEXPALPHA1.10...	expansin A9 (.1)		Lus10033801 [exp]	5.3	0.7279
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Lus10012075 [exp]	6.9	0.6984
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10042507 [exp]	9.5	0.6581
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Lus10013477 [exp]	11.3	0.6940
AT3G56720			unknown protein		Lus10027280 [exp]	13.7	0.6798
					Lus10007413 [exp]	16.7	0.6790
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10016768 [exp]	18.7	0.6645
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10014885 [exp]	19.7	0.6700
AT3G58480			calmodulin-binding family prot...		Lus10016219 [exp]	24.2	0.6814

Compare expression of checked genes

Lus10027677 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.