Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24670 444 / 2e-155 TAR2 tryptophan aminotransferase related 2 (.1.2) AT1G23320 361 / 1e-123 TAR1 tryptophan aminotransferase related 1 (.1) AT1G70560 360 / 4e-123 CKRC1, WEI8, TAA1, sav3 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) AT1G34060 245 / 2e-77 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G34040 244 / 6e-77 ATMEPCT Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039944 [exp] 676 / 0 AT4G24670 489 / 5e-172 tryptophan aminotransferase related 2 (.1.2) Lus10018088 [exp] 456 / 2e-155 AT1G60780 632 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10006199 [exp] 356 / 5e-122 AT1G70560 405 / 6e-141 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Lus10036846 [exp] 351 / 1e-119 AT1G70560 415 / 4e-144 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Lus10028695 [exp] 235 / 2e-73 AT1G34060 474 / 4e-165 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10042084 [exp] 223 / 2e-71 AT4G24670 190 / 5e-60 tryptophan aminotransferase related 2 (.1.2) Lus10007085 [exp] 212 / 2e-64 AT1G34060 456 / 5e-158 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10042085 [exp] 0 / 1 ND 43 / 2e-08
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T125108 [exp] 485 / 1e-171 AT4G24670 487 / 7e-171 tryptophan aminotransferase related 2 (.1.2) Potri.012G083300 [exp] 483 / 9e-171 AT4G24670 489 / 1e-171 tryptophan aminotransferase related 2 (.1.2) Potri.010G044500 [exp] 387 / 1e-133 AT1G70560 504 / 4e-179 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Potri.008G187800 [exp] 387 / 1e-133 AT1G70560 477 / 1e-168 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Potri.002G064000 [exp] 241 / 9e-76 AT1G34060 514 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.002G063800 [exp] 236 / 5e-74 AT1G34060 472 / 1e-164 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF04864 [flax] [poplar] Alliinase_C Allinase
Representative CDS sequence Show only first row Show all	>Lus10027678 pacid=23151269 polypeptide=Lus10027678 locus=Lus10027678.g ID=Lus10027678.BGIv1.0 annot-version=v1.0 ATGTACGAGCAGTTCTGGCGGGAAACGGGTGACAGAGCTACCATCGTGATTCCAGGCTGGCAGTCCACCAGCTACTTCTCCGACATTGGAAACCTCTGTT GGTTCCTTGAACCCGAGCTATCTCGTCAGATCGTCAGGCTCCATTCAGTCGTCGGAAATGCCATCACAGACGGCCGCCACATCGTCGTCGGCACCGGCTC CACCCAGCTCTTTTTAGCCGTCTTGTACGCTCTTTGCCCTCAAAACGTCACCCAACCCGTTAGCGTCGTTTCCATGGCACCCTTCTACTCCTCGTATCCT ACGACGACGGATTGCCTGAGATCTGGTCTATACAGGTGGGCGGGCGACGCCGCCACTTTCGATGGTGACGGGTCGTTCGTAGAATTGGTTACATCCCCGA ATAATCCGGATGGGTTTTTAAGGGATCCGGTGGTGAAGAAAAAAGGAGGAATCTTGGTTCACGATCTGGCTTACTACTGGCCGCAGTACACTGCCGTGAC GAAGCCGGTGGATCACGACATTTCCCTCTTCACCGTCTCGAAATCAACCGGCCATGCTGGAATTAGAATCGGTTGGGCACTGGTGAAGGACGCAGAGGTG GCGAGGAAAATGACGAAATTCATAGAGCTGAACAGCATTGGGGTGTCAAAGGATTCGCAGCTTAGAGCAGCGAAGATAATGAAGGTGGTTTCGGATGGAG AATCAGAAGCGAGAAGTAGTGAGAGTGATTCTCTGTTCAAGTTCGGATTCGTAAAGATGGAAGAGAGGTGGAGGATGCTGAGGGAAGCAGTGAAACAGAG TGGAGGCTTGCTTGGCTTGCCATATTACCCATCCCTTTACTGCAACTTCAATGCCCGATCTTTTGGAAACCAACCCGCATTTGCGTGGGTGAAGTGCGAG GGTGAGATTGAGGACTGCGAAGGGATGTTCAGAGAGAAGAAAGTATTAACGAGGGGTGGAGTTCATTTTGGGGCTAGCCCTAAGTACGTTAGGATTAGTA TGCTGGACCGTGATGTGAATTATAACGTCTTCATCAAAAGACTGAGCAACTTATGA
AA sequence Show only first row Show all	>Lus10027678 pacid=23151269 polypeptide=Lus10027678 locus=Lus10027678.g ID=Lus10027678.BGIv1.0 annot-version=v1.0 MYEQFWRETGDRATIVIPGWQSTSYFSDIGNLCWFLEPELSRQIVRLHSVVGNAITDGRHIVVGTGSTQLFLAVLYALCPQNVTQPVSVVSMAPFYSSYP TTTDCLRSGLYRWAGDAATFDGDGSFVELVTSPNNPDGFLRDPVVKKKGGILVHDLAYYWPQYTAVTKPVDHDISLFTVSKSTGHAGIRIGWALVKDAEV ARKMTKFIELNSIGVSKDSQLRAAKIMKVVSDGESEARSSESDSLFKFGFVKMEERWRMLREAVKQSGGLLGLPYYPSLYCNFNARSFGNQPAFAWVKCE GEIEDCEGMFREKKVLTRGGVHFGASPKYVRISMLDRDVNYNVFIKRLSNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24670		TAR2	tryptophan aminotransferase re...		Lus10027678 [exp]	0	1
AT3G53900		UPP, PYRR	PYRIMIDINE R, uracil phosphori...		Lus10012654 [exp]	1.0	0.8491
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10011542 [exp]	8.1	0.8074
AT3G20240			Mitochondrial substrate carrie...		Lus10034806 [exp]	11.5	0.7647
AT3G20390			endoribonuclease L-PSP family ...		Lus10040074 [exp]	14.0	0.8161
AT3G13560			O-Glycosyl hydrolases family 1...		Lus10039179 [exp]	15.5	0.8183
AT4G24470	GATA	GATA25, TIFY1, ...	Zinc-finger protein expressed ...		Lus10002412 [exp]	19.3	0.8051
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10011168 [exp]	23.4	0.7778
AT4G34460		ELK4, AGB1, ATA...	ERECTA-LIKE 4, GTP binding pro...		Lus10023579 [exp]	29.5	0.7176
AT5G36740			Acyl-CoA N-acyltransferase wit...		Lus10022055 [exp]	31.0	0.7868
AT5G55150			Protein of unknown function (D...		Lus10007081 [exp]	31.6	0.7355

Compare expression of checked genes

Lus10027678 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.