Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40390 1040 / 0 RS5, SIP1 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) AT5G20250 566 / 0 RS6, DIN10 raffinose synthase 6, DARK INDUCIBLE 10, Raffinose synthase family protein (.1.2.3.4) AT3G57520 555 / 0 RS2, ATSIP2 raffinose synthase 2, seed imbibition 2 (.1.2.3) AT1G55740 506 / 7e-169 RS1, ATSIP1 raffinose synthase 1, seed imbibition 1 (.1) AT4G01970 474 / 5e-155 RS4, ATSTS raffinose synthase 4, stachyose synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022240 [exp] 720 / 0 AT5G40390 744 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Lus10017516 [exp] 572 / 0 AT5G20250 1145 / 0.0 raffinose synthase 6, DARK INDUCIBLE 10, Raffinose synthase family protein (.1.2.3.4) Lus10007537 [exp] 558 / 0 AT3G57520 1235 / 0.0 raffinose synthase 2, seed imbibition 2 (.1.2.3) Lus10008771 [exp] 332 / 5e-109 AT5G40390 339 / 1e-112 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Lus10022241 [exp] 331 / 2e-107 AT5G40390 342 / 2e-112 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Lus10041370 [exp] 128 / 5e-34 AT5G40390 71 / 8e-15 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Lus10039945 [exp] 0 / 1 AT5G40390 164 / 8e-58 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Lus10039946 [exp] 0 / 1 AT5G40390 123 / 9e-38 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T124908 [exp] 1210 / 0 AT5G40390 1055 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Potri.017G036700 [exp] 1126 / 0 AT5G40390 1118 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Potri.007G123400 [exp] 1122 / 0 AT5G40390 1147 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Potri.004G207900 [exp] 1115 / 0 AT5G40390 1145 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Potri.006G065700 [exp] 551 / 0 AT5G20250 1154 / 0.0 raffinose synthase 6, DARK INDUCIBLE 10, Raffinose synthase family protein (.1.2.3.4) Potri.018G126400 [exp] 546 / 0 AT5G20250 1218 / 0.0 raffinose synthase 6, DARK INDUCIBLE 10, Raffinose synthase family protein (.1.2.3.4) Potri.011G166700 [exp] 537 / 0 AT1G55740 1154 / 0.0 raffinose synthase 1, seed imbibition 1 (.1) Potri.006G052800 [exp] 536 / 2e-180 AT3G57520 1290 / 0.0 raffinose synthase 2, seed imbibition 2 (.1.2.3) Potri.016G054700 [exp] 530 / 6e-178 AT3G57520 1278 / 0.0 raffinose synthase 2, seed imbibition 2 (.1.2.3) Potri.015G086400 [exp] 525 / 2e-176 AT3G57520 827 / 0.0 raffinose synthase 2, seed imbibition 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF05691 [flax] [poplar] Raffinose_syn Raffinose synthase or seed imbibition protein Sip1
Representative CDS sequence Show only first row Show all	>Lus10027679 pacid=23151301 polypeptide=Lus10027679 locus=Lus10027679.g ID=Lus10027679.BGIv1.0 annot-version=v1.0 ATGGCTCCTCCTAGTTTAACCAAAGCCTCCGCTGCCTTAGGTGTCTTGCCAATCCCCGACGACACCAACAACCTCCACCACCTTCCCCTGAATTCCATAT CACTCCAAGGTTCTGAATTCCTCGCCAATGGCCACCCAATCCTCACCCATGTCCCCTCCAACATCACCTCCTTCACACCTTTCCCTCTCCCATCGCTCCA TACTAAATCCACTGTTCCCCCCGCACCCCTCGGCTGCTTCGTCGGCTTCCACGCCACCCACCCCAACTCCCGCCACGTGGTACCAATCGGGATGCTTACA GGGATCCGGTTCATGAGCATTTTCCGGTTCAAGGTCTGGTGGACTACCCACTGGGTGGGTAACCGGGGCAGGGAAATCCAACACGAGACCCAGATGATGA TCCTCGACCGAAACGACGACGGATCACGTCCTTACGTCCTCCTCCTTCCTCTCATCGAAGGATCCTTTCGGGCGTCCCTCCAGCCCTCCGCCGATCACAA CGACTACGTGGACATGTGCGTGGAAAGCGGGTCGACCCGGGTCACCGGATCGATCTTCGGGAGCTGCCTGTATATGCAGGCAGGGGATGACCCGTATACA CTGTTGAAGGACGCACTGAAGGCTATTAAGGTACATTTAGGGACGTTCAATCTGCTGGAAGAAAAATCCCCTCCTGAGATAGTGGACAAATTCGGATGGT GCACTTGGGACGCATTTTACCTCAATGTAAACCCTAAGGGAGTTTGGGAAGGAGTGAAGGGACTGGTTGAAGGCGGGTGCCCGCCGGGTATGGTGCTGAT CGACGACGGGTGGCAGTCAATTTGTCACGACGAAGATCCGATTACCGACCGTGAAGGGATGAATCGCACGGAGGCAGGGGAGCAGATGCCGTGCAGGTTG ATAAAGTTTCAGGAGAATCACAAGTTTCGGGATTACGAGAGCTCCAAGTGGGGGAAAGGAATGAGAGGTTTTGTCAAGGACTTGAAAGAAAGGTTTAAGA ACGTGGAATTTGTGTATGTGTGGCATGCGCTTTGTGGGTATTGGGGCGGGATCCGACCCGGTGTCCCTGGAATGCCCAAATCCAAGGTGGTTGTTCCGAA GTTGTCTGAAGGGTTGAAGAAGACGATGGAGGATCTCGCGGTGGATAAGATTGTCAACAATGGAGTTGGCCTTGTTCCACCGGAGATGGCTTATAAGTTG TACCATGGGATTCACTCTCATCTACAGTCGGCTGGGATTGACGGTGTTAAAGTTGATGTTATTCATCTACTGGAGATGCTGTCAGAGGAGTTTGGTGGGA GAGTTGAGCTTGCTAAAGCTTACTACAATGCCCTAACTGCTTCAGTAAGGAAACATTTCAAAGGCAACGGGGTGATTGCCAGCATGGAGCACTGCAATGA CTTCATGTTCCTCGGAACAGAGGCCATATCCCTTGGCCGTGTTGGGGATGATTTCTGGTGTACAGACCCATCAGGGGACCCGAACGGAACATACTGGCTA CAAGGCTGTCACATGGTACATTGTGCATATAACAGCTTGTGGATGGGGAACTTCATTCACCCTGACTGGGACATGTTTCAGTCAACTCACCCTTGTGCTG AATTCCATGCTGCTTCTCGAGCAATCTCCGGCGGCCCCATTTACGTCAGCGACTCCGTCGGAAACCACAACTTTGACCTCCTCAAACAACTAGTGCTGCC TGATGGATCCATCCTGCGCTGCCACTATTATGCTCTCCCAACCAGGGACTGTCTCTTCCAAGATCCCTTGCACGATGGCAAAACTATGCTCAAGATTTGG AACATCAACAAGTACACTGGAGTTTTGGGGATGTTCAACTGCCAAGGGGGAGGATGGTGTCCTGAATCTAGGAGGAACACAAGTGCTTCCCGATTCTCCC ACACCATTTCTTGTACAGCTAGTCCAAAGGACATCGAATGGTACAGCGGGAAGACCCCAATTTCCACGAAAGGAGTTACCGTGTTTGCTGTCTATATGTG CAAGGCCAAGAAACTTAAGCTGTTGAAATTTTCCGACAGCTGGGAACATTCCTTATTACCCTTTGATTTCGAGCTGCTCACAGTTTCCCCGGTGAGAGTT CTGGCGGGAATTTCAGTGCAGTTTGCAGCCATCGGATTGACCAACATGCTCAACTCTGGTGGTGCGATTCGGTTGGTTGAGATGGAGGAAGATGAACAGT TGATCCGCGTTGGAGTGAAGGGATGTGGCGAAATGAAGGCTTTTGCTTCAGAAAAGCCATCAAGCTGTTGGATGGATGGGAAGGAAGTTGAGTTTCAGTA TGATGATCAGATGGTCACTATTGAAGTCCCTTGGCCAGGATCTGATATGTTGACTGAAGTAGAATACAGATTTTGA
AA sequence Show only first row Show all	>Lus10027679 pacid=23151301 polypeptide=Lus10027679 locus=Lus10027679.g ID=Lus10027679.BGIv1.0 annot-version=v1.0 MAPPSLTKASAALGVLPIPDDTNNLHHLPLNSISLQGSEFLANGHPILTHVPSNITSFTPFPLPSLHTKSTVPPAPLGCFVGFHATHPNSRHVVPIGMLT GIRFMSIFRFKVWWTTHWVGNRGREIQHETQMMILDRNDDGSRPYVLLLPLIEGSFRASLQPSADHNDYVDMCVESGSTRVTGSIFGSCLYMQAGDDPYT LLKDALKAIKVHLGTFNLLEEKSPPEIVDKFGWCTWDAFYLNVNPKGVWEGVKGLVEGGCPPGMVLIDDGWQSICHDEDPITDREGMNRTEAGEQMPCRL IKFQENHKFRDYESSKWGKGMRGFVKDLKERFKNVEFVYVWHALCGYWGGIRPGVPGMPKSKVVVPKLSEGLKKTMEDLAVDKIVNNGVGLVPPEMAYKL YHGIHSHLQSAGIDGVKVDVIHLLEMLSEEFGGRVELAKAYYNALTASVRKHFKGNGVIASMEHCNDFMFLGTEAISLGRVGDDFWCTDPSGDPNGTYWL QGCHMVHCAYNSLWMGNFIHPDWDMFQSTHPCAEFHAASRAISGGPIYVSDSVGNHNFDLLKQLVLPDGSILRCHYYALPTRDCLFQDPLHDGKTMLKIW NINKYTGVLGMFNCQGGGWCPESRRNTSASRFSHTISCTASPKDIEWYSGKTPISTKGVTVFAVYMCKAKKLKLLKFSDSWEHSLLPFDFELLTVSPVRV LAGISVQFAAIGLTNMLNSGGAIRLVEMEEDEQLIRVGVKGCGEMKAFASEKPSSCWMDGKEVEFQYDDQMVTIEVPWPGSDMLTEVEYRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Lus10027679 [exp]	0	1
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10028929 [exp]	2.6	0.9566
AT4G09600		GASA3	GAST1 protein homolog 3 (.1)		Lus10014262 [exp]	3.0	0.9540
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10008603 [exp]	4.5	0.9507
					Lus10024349 [exp]	5.7	0.9541
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10018765 [exp]	8.5	0.9529
AT4G28720		YUC8	YUCCA 8, Flavin-binding monoox...		Lus10000494 [exp]	8.8	0.9396
AT2G44740		CYCP4;1	cyclin p4;1 (.1)		Lus10043003 [exp]	8.8	0.9460
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10004348 [exp]	10.5	0.9420
AT2G42560			late embryogenesis abundant do...		Lus10000465 [exp]	13.0	0.9044
AT1G70560		CKRC1, WEI8, TA...	WEAK ETHYLENE INSENSITIVE 8, S...		Lus10036846 [exp]	14.0	0.8799

Compare expression of checked genes

Lus10027679 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.