Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54170 332 / 6e-113 ATFIP37 FKBP12 interacting protein 37 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039948 [exp] 459 / 2e-162 AT3G54170 414 / 4e-145 FKBP12 interacting protein 37 (.1) Lus10018090 [exp] 365 / 2e-125 AT3G54170 390 / 6e-136 FKBP12 interacting protein 37 (.1) Lus10042086 [exp] 353 / 3e-114 AT3G54170 381 / 3e-125 FKBP12 interacting protein 37 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G197600 [exp] 392 / 2e-136 AT3G54170 359 / 5e-124 FKBP12 interacting protein 37 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027681 pacid=23151230 polypeptide=Lus10027681 locus=Lus10027681.g ID=Lus10027681.BGIv1.0 annot-version=v1.0 ATGCCTTCTCGCAACAATCTCGACGACGACAAAATTGACATATTGAGGGCCGATGACGTCGGTGGTGATTTCAGTGGCAGCCACAACGGCCGGCGTTCAG GTAACAAGAGGAGTTTTGGGGACCTTGAAGACGATGACGATGACATTTTTAGCTCCAAGAAGGGTATTTCCAAGGTAGAAGAAACTGCAATGATTCTGTC TCTTCGTGAGAGTCTTGACAACTCCAAGAACGACCTTGTGACATGCCAAGTATGTTATTCTCCCTGCTTAGCTGCTCTTGTCATTCCCAGTTTCTTAGAA TTGACAGATCTTGAAGTCGCGAAGTTGGAGATTCAAAAGTGGCTTTCTGCATTTGAGAATTCCTCTTTCATGCCCTTTGGGAAATCTCCAGAACCTAAAA TAGTCATCAATTACCTTCAGACTCTGAAATCCTCTGAGGAGTCTATAAAGGAACAGCTTGAGAAAGCAAAGAAAAAAGAAGCGGCCTTCATTGTAACATT TGCTAAGAGGGAGCAGGAGATAGCAGAATTGAAGTCTGCAGTTCGGGACTTGAGAGCACAACTAAAGCCACCATCAATGCAGGCAAGGAGACTGCTACTT GATCCTGCAATTCACGAGGAATTTACTCGCTTGAAGAATTTAGTCGAAGAGAAGGACAAAAAAGTGAAGGAACTACAGGATAACATGGCTGCCGTGAATT TTACTCCACAAAGCAAGATGGGGAAGATGCTGATGGCAAAGTGCAAGACTCTGATAGAGGAAAATGTAGAGATTGGTAATCAAGCTGCTGAAGGAAAGAT ACACGAGCTGGGATTGAAACTAGCTTTGCAGAAATCTCAAAATTCAGAGCTCCGAAACCAGTATGAAGGCTTGTACAAGCAAATGGAGGGACTAACAAAC GATGTAGAGAAGTCAAATGAGATGGTACTTATCTTACAAGGGGAAGTTGGAGACAAAAACCGAGAGATCAACCAGCTGAAGCAGAAACTTGAGCTTCAAC GAAAGAAAGTGGCCGAGGCAGAAGAAGCAGCAGAGCCACCCAATAATATGACTCCAGAAAATGCACTGATAACACCCAAGCAAGAAATTGAAGCATGA
AA sequence Show only first row Show all	>Lus10027681 pacid=23151230 polypeptide=Lus10027681 locus=Lus10027681.g ID=Lus10027681.BGIv1.0 annot-version=v1.0 MPSRNNLDDDKIDILRADDVGGDFSGSHNGRRSGNKRSFGDLEDDDDDIFSSKKGISKVEETAMILSLRESLDNSKNDLVTCQVCYSPCLAALVIPSFLE LTDLEVAKLEIQKWLSAFENSSFMPFGKSPEPKIVINYLQTLKSSEESIKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLRAQLKPPSMQARRLLL DPAIHEEFTRLKNLVEEKDKKVKELQDNMAAVNFTPQSKMGKMLMAKCKTLIEENVEIGNQAAEGKIHELGLKLALQKSQNSELRNQYEGLYKQMEGLTN DVEKSNEMVLILQGEVGDKNREINQLKQKLELQRKKVAEAEEAAEPPNNMTPENALITPKQEIEA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10027681 [exp]	0	1
AT5G62950			RNA polymerase II, Rpb4, core ...		Lus10039583 [exp]	1.7	0.9094
AT5G57230			Thioredoxin superfamily protei...		Lus10003582 [exp]	1.7	0.9236
AT5G12410			THUMP domain-containing protei...		Lus10019037 [exp]	2.6	0.9073
					Lus10015592 [exp]	2.8	0.9085
AT5G14290			Mitochondrial ribosomal protei...		Lus10041583 [exp]	3.2	0.9127
AT4G15950		RDM2, NRPE4, NR...	RNA-DIRECTED DNA METHYLATION 2...		Lus10038766 [exp]	3.5	0.9079
AT3G11730		ATFP8, AtRABD1	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10036442 [exp]	3.9	0.9083
AT5G08420			RNA-binding KH domain-containi...		Lus10042479 [exp]	4.6	0.8717
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10043279 [exp]	5.5	0.9009
AT3G62330			Zinc knuckle (CCHC-type) famil...		Lus10010000 [exp]	8.7	0.8816

Compare expression of checked genes

Lus10027681 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.