Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10790 199 / 8e-60 UBX domain-containing protein (.1) AT4G11740 66 / 2e-11 SAY1 Ubiquitin-like superfamily protein (.1) AT4G23040 63 / 1e-10 Ubiquitin-like superfamily protein (.1) AT4G00752 54 / 8e-08 UBX domain-containing protein (.1) AT2G43210 45 / 4e-05 Ubiquitin-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039951 [exp] 318 / 4e-108 AT4G10790 117 / 2e-29 UBX domain-containing protein (.1) Lus10003214 [exp] 85 / 7e-18 AT4G10790 525 / 0.0 UBX domain-containing protein (.1) Lus10017317 [exp] 82 / 3e-17 AT4G10790 382 / 4e-130 UBX domain-containing protein (.1) Lus10041365 [exp] 64 / 5e-11 AT4G11740 241 / 4e-74 Ubiquitin-like superfamily protein (.1) Lus10029591 [exp] 61 / 7e-10 AT4G11740 449 / 9e-153 Ubiquitin-like superfamily protein (.1) Lus10036564 [exp] 60 / 1e-09 AT4G00752 250 / 8e-78 UBX domain-containing protein (.1) Lus10006321 [exp] 60 / 1e-09 AT4G11740 433 / 7e-146 Ubiquitin-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G080200 [exp] 335 / 2e-113 AT4G10790 229 / 1e-70 UBX domain-containing protein (.1) Potri.003G145200 [exp] 181 / 9e-53 AT4G10790 552 / 0.0 UBX domain-containing protein (.1) Potri.001G085600 [exp] 175 / 1e-50 AT4G10790 520 / 0.0 UBX domain-containing protein (.1) Potri.001G109500 [exp] 62 / 2e-10 AT4G11740 429 / 2e-144 Ubiquitin-like superfamily protein (.1) Potri.003G122300 [exp] 61 / 5e-10 AT4G11740 409 / 1e-136 Ubiquitin-like superfamily protein (.1) Potri.014G075600 [exp] 56 / 1e-08 AT4G00752 273 / 8e-87 UBX domain-containing protein (.1) Potri.007G123800 [exp] 43 / 0.0002 AT2G43210 330 / 6e-108 Ubiquitin-like superfamily protein (.1.2) Potri.008G142800 [exp] 43 / 0.0003 AT1G14570 541 / 0.0 UBX domain-containing protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00789 [flax] [poplar] UBX UBX domain
Representative CDS sequence Show only first row Show all	>Lus10027684 pacid=23151272 polypeptide=Lus10027684 locus=Lus10027684.g ID=Lus10027684.BGIv1.0 annot-version=v1.0 ATGGGAAATGGAATGGGCCGTAGTACATCTGGAGGGAATGAAGGAGGAAGGAGAAGAGACATGAGTCCTCCACCTGATGAGGAATTGGAATTCCTGACCA CTTTCCAGAGGCAGTACGGAACCAACCATCCATTCTTCTACAGCTGCAGATTGGGAGAGGCACTGAGTATAGCAGACGAGGAGCGCAAATTCGTGTTCAT GTACATCCACTCTCCAAACCACCCTTTCTCCTCCTCCTTCTGCAAGGACACCCTTTGCTGCGAGCCAGTGGTTCAGTTCCTCGACGAGAATTTCATATCG TGGGGAGCACTTTTCGACAGAGGACAAGGCCTCCAAATTGCTTCTTCCGTTTTGAGGCCAGCGACATTCCCTTGCTGTGCCGTTGTTGCTCCAGCTGTTG CCGACAACATCAACGTCCTCCAACAGATGGAAGGTCCTATGTCACCGCAGCAGTTGCTTGAGATGTTGCAGAGGGCTGTTGATGAACATGGGTTGGCTTT CGGCCATTTTGGGGCTAAAGAGAGGAAACGTGGCAAAGCTAGAGCGATGGAGGCCGATGAGAAGATTCGAGCTGAACAGGATTCAGCTTATCATGCTGCT CTCATTACAGACCAGTTCATTAGAACTCCAAAAGTTGGGATTAACCCTGTTACCAAAAAACCTGAGCAGGAAAAAGGAAAGTCGAAGAACCAAAAACCTG AACAGAAGAGGGGCCAGAAATCTGCAAACAACAATAACCAGTTTGGTAGACCAGTGGTTCCTTCCACTGTTAAACGTCAAGCTCAAAAGTCGAAAGAAGA AACTGTTACAACTACCCAGATTGTGATCAGGTTTCCGAACGGGGAAAGGAGAGAGCAGAAGTTCTCCAGCTCAGACAAGGTGCAGTCAGTTTTCAGGTAT ATTAATTCCTTAAGCCTTTCAGGAACGGGGAAGTACAGATTGGTGTCCAGCTTTCCGAGAAGAGTATATGGCGCTGATCAATCAGGGATGTCATTGAAAG ATGTTGGACTACATCCTAAAGCAACTCTTTTCCTTGAGCCCATCTGA
AA sequence Show only first row Show all	>Lus10027684 pacid=23151272 polypeptide=Lus10027684 locus=Lus10027684.g ID=Lus10027684.BGIv1.0 annot-version=v1.0 MGNGMGRSTSGGNEGGRRRDMSPPPDEELEFLTTFQRQYGTNHPFFYSCRLGEALSIADEERKFVFMYIHSPNHPFSSSFCKDTLCCEPVVQFLDENFIS WGALFDRGQGLQIASSVLRPATFPCCAVVAPAVADNINVLQQMEGPMSPQQLLEMLQRAVDEHGLAFGHFGAKERKRGKARAMEADEKIRAEQDSAYHAA LITDQFIRTPKVGINPVTKKPEQEKGKSKNQKPEQKRGQKSANNNNQFGRPVVPSTVKRQAQKSKEETVTTTQIVIRFPNGERREQKFSSSDKVQSVFRY INSLSLSGTGKYRLVSSFPRRVYGADQSGMSLKDVGLHPKATLFLEPI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10790			UBX domain-containing protein ...		Lus10027684 [exp]	0	1
					Lus10003556 [exp]	1.4	0.9723
AT2G17700		STY8	serine/threonine/tyrosine kina...		Lus10004153 [exp]	1.4	0.9692
AT1G69970		CLE26	CLAVATA3/ESR-RELATED 26 (.1.2)		Lus10010735 [exp]	2.0	0.9582
AT4G32870			Polyketide cyclase/dehydrase a...		Lus10000573 [exp]	2.4	0.9637
					Lus10033890 [exp]	2.6	0.9448
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10011063 [exp]	4.2	0.9496
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10020190 [exp]	6.7	0.9529
AT5G39020			Malectin/receptor-like protein...		Lus10025545 [exp]	8.5	0.9394
AT2G39440			unknown protein		Lus10018300 [exp]	9.8	0.9421
AT2G41110		ACAM-2, ATCAL5,...	calmodulin 2 (.1.2)		Lus10021487 [exp]	9.9	0.9364

Compare expression of checked genes

Lus10027684 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.