Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19180 258 / 2e-77 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14240 122 / 1e-29 GDA1/CD39 nucleoside phosphatase family protein (.1.2.3.4) AT1G14250 121 / 2e-29 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14230 118 / 4e-28 GDA1/CD39 nucleoside phosphatase family protein (.1) AT2G02970 114 / 7e-27 GDA1/CD39 nucleoside phosphatase family protein (.1) AT3G04080 74 / 7e-14 ATAPY1 apyrase 1 (.1) AT5G18280 72 / 4e-13 ATAPY2 apyrase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039953 [exp] 674 / 0 AT4G19180 267 / 1e-81 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10033317 [exp] 241 / 1e-70 AT4G19180 886 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10034777 [exp] 239 / 5e-70 AT4G19180 879 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10037285 [exp] 239 / 4e-69 AT4G19180 871 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10035695 [exp] 183 / 6e-50 AT4G19180 660 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10030470 [exp] 122 / 2e-29 AT2G02970 613 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10012825 [exp] 118 / 4e-28 AT2G02970 605 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10006546 [exp] 82 / 2e-16 AT5G18280 647 / 0.0 apyrase 2 (.1.2) Lus10042528 [exp] 79 / 3e-15 AT5G18280 684 / 0.0 apyrase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G079900 [exp] 461 / 1e-157 AT4G19180 276 / 6e-84 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.004G236900 [exp] 238 / 9e-70 AT4G19180 840 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.019G031200 [exp] 99 / 6e-22 AT3G04080 422 / 1e-144 apyrase 1 (.1) Potri.009G157500 [exp] 97 / 3e-21 AT2G02970 330 / 9e-107 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.008G086400 [exp] 85 / 2e-17 AT2G02970 635 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.010G169100 [exp] 82 / 2e-16 AT2G02970 606 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.013G053500 [exp] 78 / 3e-15 AT5G18280 637 / 0.0 apyrase 2 (.1.2) Potri.019G031000 [exp] 77 / 1e-14 AT5G18280 617 / 0.0 apyrase 2 (.1.2) Potri.013G053700 [exp] 67 / 4e-12 AT5G18280 300 / 2e-98 apyrase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF01150 [flax] [poplar] GDA1_CD39 GDA1/CD39 (nucleoside phosphatase) family
Representative CDS sequence Show only first row Show all	>Lus10027686 pacid=23151271 polypeptide=Lus10027686 locus=Lus10027686.g ID=Lus10027686.BGIv1.0 annot-version=v1.0 ATGGAACCCATATCCCCTTCGAAATTTAAGCTCCCAATCTGGAGTCTCGCTCGATTCAGTAGGCTTTTGAAATTGTTCGCAGCTGCTTTAGTGGTTCTGC TAGTAGTGCTGGGCGTCTATTATGCACTTCCATTTGACGAAACCAAATATTATTATACGGTTGTATTGGATTGTGGTAGCACTGGAACAAGAGTGAATGT ATACAAGTGGAAAACAATTCTTTCTGGGGACATGGGTTTGCCTGTTTTAGTTACTTCTTATCCTGAATACTCAACTAGCAGTAGTAGCACTTTGAAAGCT CCTTCCTGCAAGTATCACTGCTTTCAAACTGAGCCAGGCTTGGATAGGTTTGTTGGTAATCCTTCAGCTGTGAAATCTTCCTTGGGGCCGTTGATTCAAT TGGCTGAAAAATGGGTGCCTCGTCAAAGACATTCGAATACCCCAATTTTTGTTCTGGCTACTGCTGGGTTGAGAAGGCTGCGGCGTGAGGATGCTTTGCA GGTTTTGGACGATGTGGAGACTGTTGTAAAGGAACATTCTTTTGTTTATAGGAAAGAGTGGGTTAGAGTTTTGAGTGGGAAAGAGGAAGCTTACTATGGT TGGGTGGCTTTGAATTATAGGATGGGAAGGCTGGGGAATCCGAATTCCTCAACCCTGGGACTTCTTGATCTGGGAGGTTCTTCATTGCAGATTGTGACTG AAGTTGGCGGCGGTGATATTCGAGGAAGCGAGAATGTGATGAAATCAGAAGTTGGGTTAGTACAACATTGGATTTTAGCATATTCATTACCGTCTTTTGG TTTGAATGAGGCATTCGATAGGACGATTTCTATGCTCCGTCAGGTGCAGCCTGTTGTTGGTCAAAGTCAAACCACTAATAATGATGTTTTCGAACCTGAT CATCCTTGTCTCATCAGTAATTACACAGCGAAAATGAAGTTGAGTCGTAATATAGTCGGTGTCCCAGACTGGAACAAGTGTAAAGCTGTAGCAAGAGCTG CAGCAATCAACTCCAGTAGTTTGAATTTGTCGCACTCCATGGTTGGGAGTAATTGCAAAGCAAGCTTCTCTCCAAATAACAGCAGTAGTAATATCCTGGA GTTGGCAGCTAGTTCCCGCAAAAATCAGCAATTTCATGCTATATCTGGTTTTTATGCTGTTCACAACATCTTAAATCTGAATCCAAGAGCGAATTTTACA AAGATATGGGAGAGAGGCAGGGAGCTATGTTCAAAACCAACGGCCAAAATTCGCAGAAAAATCGCAGACAAGAAGTATGCTAGGCGGTACTGTTTCAGCC TGCCTTATACAGTATCACTCATCCAGGACTTGCTATGTCTTAGCGACAGAGAGATAACATTTGGTCCTGGAGATGTATCGTGGACACTGGGAGCTGCATT GGTTGAAGGTGACTACCTCTGGCGACAAAGCATCAGTGCTGCAGAAGGGAAAAGCTTTCGTTTCCTGAAAAGCATGGATTCCCCAGTTTTGGTGTTCCTT GTACTGTTATGTCTTCTGATTGTTGTTTACTACAGCAAGATGAAGCTGCCTATGATTGGGAAGAAGGCCGCTGCTTCTGCTGTTGGCCCATCATTACCAT CTTACGTATATCCCAAGCAACGGCCTAACTGA
AA sequence Show only first row Show all	>Lus10027686 pacid=23151271 polypeptide=Lus10027686 locus=Lus10027686.g ID=Lus10027686.BGIv1.0 annot-version=v1.0 MEPISPSKFKLPIWSLARFSRLLKLFAAALVVLLVVLGVYYALPFDETKYYYTVVLDCGSTGTRVNVYKWKTILSGDMGLPVLVTSYPEYSTSSSSTLKA PSCKYHCFQTEPGLDRFVGNPSAVKSSLGPLIQLAEKWVPRQRHSNTPIFVLATAGLRRLRREDALQVLDDVETVVKEHSFVYRKEWVRVLSGKEEAYYG WVALNYRMGRLGNPNSSTLGLLDLGGSSLQIVTEVGGGDIRGSENVMKSEVGLVQHWILAYSLPSFGLNEAFDRTISMLRQVQPVVGQSQTTNNDVFEPD HPCLISNYTAKMKLSRNIVGVPDWNKCKAVARAAAINSSSLNLSHSMVGSNCKASFSPNNSSSNILELAASSRKNQQFHAISGFYAVHNILNLNPRANFT KIWERGRELCSKPTAKIRRKIADKKYARRYCFSLPYTVSLIQDLLCLSDREITFGPGDVSWTLGAALVEGDYLWRQSISAAEGKSFRFLKSMDSPVLVFL VLLCLLIVVYYSKMKLPMIGKKAAASAVGPSLPSYVYPKQRPN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10027686 [exp]	0	1
AT1G58350		ZW18	Putative serine esterase fami...		Lus10036214 [exp]	1.4	0.8168
AT5G43100			Eukaryotic aspartyl protease f...		Lus10018709 [exp]	9.6	0.7890
AT5G19670			Exostosin family protein (.1)		Lus10034951 [exp]	10.2	0.7821
AT3G59350			Protein kinase superfamily pro...		Lus10025498 [exp]	11.0	0.7870
AT3G55830		EPC1	ECTOPICALLY PARTING CELLS, Nuc...		Lus10040216 [exp]	11.0	0.7600
AT5G03470		ATB' ALPHA, ATB...	Protein phosphatase 2A regulat...		Lus10023920 [exp]	13.6	0.7697
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Lus10005206 [exp]	19.1	0.7731
AT3G27460		AtSGF29a	SaGa associated Factor 29 a, S...		Lus10014593 [exp]	19.4	0.7329
AT1G68920	bHLH	bHLH049, ACE1	basic helix-loop-helix (bHLH) ...		Lus10013052 [exp]	22.2	0.7530
AT3G45600		TET3	tetraspanin3 (.1)		Lus10023338 [exp]	25.7	0.7542

Compare expression of checked genes

Lus10027686 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.