Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63040 314 / 2e-105 unknown protein AT1G48460 159 / 2e-45 unknown protein AT3G60590 68 / 2e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039957 [exp] 613 / 0 AT5G63040 323 / 5e-109 unknown protein Lus10032738 [exp] 107 / 7e-26 AT1G48460 246 / 2e-79 unknown protein Lus10015886 [exp] 65 / 4e-11 AT4G00060 669 / 0.0 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G088700 [exp] 430 / 7e-151 AT5G63040 344 / 4e-117 unknown protein Potri.014G038800 [exp] 152 / 2e-42 AT1G48460 343 / 2e-117 unknown protein Potri.014G061000 [exp] 59 / 2e-09 AT3G60590 382 / 9e-132 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027687 pacid=23151185 polypeptide=Lus10027687 locus=Lus10027687.g ID=Lus10027687.BGIv1.0 annot-version=v1.0 ATGGCTGTTAGAGCTGGTCCATTGGCAGTATCTTCTGCCGCTTCTTCGCTTTCTTCTTCTCTTAAGCTGCAGAGAAGCTCCAAGCTAAGCTTAAGAGATG GACCGTTTGGTAGCCTGCACTTTGGAATTCCCAATTCCAAGATTGCAATAGTCAAATTGGGCACTTCCACTTGTGGTCGGCTGCAAAGTGATAGAAAGCT TCACATGAGACCAAATTTGATCTGTGCAATTTCCCAGGACCAGTCACAGTACAGTGAGCCAGAACAGGAAGATTCTCCTTCTAATCCTGATTCTATCTCC ACCCTTAGCAGTTCATTCAGCGACACTCATGGAGCCGGTGGAAAACCTGGTTTTGTATCATTCTATAGTCATCCATATAAAACACAAGACGAAGTTGCTG CAGCTTACCCTGTACAAAACAATAAGAGCAGCCTATTGTGGTTCCTTGGTCCAGCTGTCCTTGTGGCGTCTTTCATCTTCCCTTCCATTTATTTGCGCAA AATACTCTCTCTGATATTTGAGGACTCCTTGCTCACAGATTTCCTCATCCTATTCTTCACGGAAGCAATCTTCTACGGTGGTGTTGCCATTTTCCTTCTT TTGATAGACCATTTGAAAAGGCCTGATGAAACAGAAGCTACTCCAAGCAACGAAGCCACACCTTCTCCTCAGTTAGGCCAGAGAATATCTTCTGTTGCTA CCTTGGTTATCAGTCTTATAGTTCCTATGGTTACTATGGGATTCGTCTGGCCATGGACTGGCCCTGCTGCTTCGGCCACTCTTGCTCCGTATCTGGTTGG CATTGTCGTTCAATTTGCATTTGAGCAATATGCGAGATCTCGAAAATCAGTTTCGTGGCCAGTCATCCCTATCATTTTTCAGGTTTACCGACTGCACCAA CTGAATCGGGCAACTCAACTAGTGACAGCGCTGTCATACACAGTCAATGGAGCTGAAATGACGACTCATAACCTGGAGATAAGCAGCTCCCTGGGCACAC TTTTGAATGTCCTGCAATTCCTCGGAGTCGTCTGTATCTGGTCTCTATCAAGCTTCCTCATGAAGTTTTTCCCATCAAACACCAGGAGGGTGACACCGTG A
AA sequence Show only first row Show all	>Lus10027687 pacid=23151185 polypeptide=Lus10027687 locus=Lus10027687.g ID=Lus10027687.BGIv1.0 annot-version=v1.0 MAVRAGPLAVSSAASSLSSSLKLQRSSKLSLRDGPFGSLHFGIPNSKIAIVKLGTSTCGRLQSDRKLHMRPNLICAISQDQSQYSEPEQEDSPSNPDSIS TLSSSFSDTHGAGGKPGFVSFYSHPYKTQDEVAAAYPVQNNKSSLLWFLGPAVLVASFIFPSIYLRKILSLIFEDSLLTDFLILFFTEAIFYGGVAIFLL LIDHLKRPDETEATPSNEATPSPQLGQRISSVATLVISLIVPMVTMGFVWPWTGPAASATLAPYLVGIVVQFAFEQYARSRKSVSWPVIPIIFQVYRLHQ LNRATQLVTALSYTVNGAEMTTHNLEISSSLGTLLNVLQFLGVVCIWSLSSFLMKFFPSNTRRVTP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63040			unknown protein		Lus10027687 [exp]	0	1
AT1G04780			Ankyrin repeat family protein ...		Lus10000752 [exp]	7.7	0.8849
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10006618 [exp]	10.4	0.9019
					Lus10018952 [exp]	13.6	0.8547
AT4G11820		FKP1, EMB2778, ...	FLAKY POLLEN 1, hydroxymethylg...		Lus10002961 [exp]	15.0	0.8869
AT5G27620		CYCH;1	cyclin H;1 (.1)		Lus10037811 [exp]	17.1	0.8948
AT2G26830		EMB1187	embryo defective 1187, Protein...		Lus10019424 [exp]	19.6	0.8810
AT1G68150	WRKY	ATWRKY9, WRKY9	WRKY DNA-binding protein 9 (.1...		Lus10035971 [exp]	20.3	0.9001
AT1G70190			Ribosomal protein L7/L12, olig...		Lus10036228 [exp]	20.5	0.8688
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10031114 [exp]	30.7	0.8340
					Lus10020157 [exp]	37.1	0.8731

Compare expression of checked genes

Lus10027687 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.