Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20140 620 / 0 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 602 / 0 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT2G33170 382 / 1e-115 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G17230 368 / 1e-110 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 367 / 1e-109 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 353 / 4e-105 Leucine-rich repeat protein kinase family protein (.1) AT5G07280 328 / 2e-95 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G73080 324 / 1e-94 ATPEPR1, PEPR1 PEP1 receptor 1 (.1) AT1G35710 320 / 3e-93 Protein kinase family protein with leucine-rich repeat domain (.1) AT5G56040 317 / 4e-93 Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036251 [exp] 563 / 0 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10038392 [exp] 497 / 1e-157 AT4G20140 1376 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10039958 [exp] 419 / 6e-138 AT5G44700 152 / 3e-40 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) Lus10023323 [exp] 369 / 2e-110 AT5G46330 1055 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Lus10023681 [exp] 351 / 8e-106 AT2G33170 1152 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10038875 [exp] 353 / 5e-104 AT5G07280 1248 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10014996 [exp] 346 / 1e-101 AT5G07280 1264 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10008230 [exp] 338 / 1e-100 AT4G20140 466 / 3e-147 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10003612 [exp] 325 / 1e-94 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G088900 [exp] 1094 / 0 AT4G20140 700 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G075000 [exp] 626 / 0 AT4G20140 1371 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G156200 [exp] 619 / 0 AT4G20140 1394 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.004G065400 [exp] 406 / 4e-124 AT5G46330 1176 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.019G120733 [exp] 371 / 2e-110 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120700 [exp] 371 / 2e-110 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.014G195100 [exp] 364 / 2e-108 AT1G35710 681 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.002G258000 [exp] 355 / 5e-105 AT4G08850 695 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.003G174900 [exp] 353 / 5e-105 AT2G33170 1348 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.002G258200 [exp] 354 / 9e-105 AT4G08850 674 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10027688 pacid=23151265 polypeptide=Lus10027688 locus=Lus10027688.g ID=Lus10027688.BGIv1.0 annot-version=v1.0 ATGAAGACACAAGGGTCTTCTGCCAGCAAATGCAAAGACAGAATCTTTGCTATGAAATTCTTTATGGGTTCCATAGTAAAGGCTCTAGTGCTGTTTATAG CATTGATCCTTGCTGTTCCAGCATCAACTGTTGATGCAGACAATACGGATTGGTTACTGAGGATCAAATCAGCTTTGGTGGATCCCAGTGGACTTCTGAA CAATTGGTCACCAGAAGTTCATTTTTGTACATGGAATGGAGTTTACTGTTCTTCTTCAGAAGATCAAATCCAAGTGGTAGGCTTGAACCTATCAAAGTCA GGTTTGTCAGGTTCCATTCCAAGTGTTCTTCAGCATCTTGTCTCACTGCAGACACTTGATTTGTCTTCCAATTTACTAACCGGCACGATTCCTGAGGAGC TAGGAGAGCTTCATGACCTTCAAGTACTCCTCCTCTACTCAAACTATCTCTCGGGAAAGATTCCTAGAGAGATTGGCTCTCTGAAGAAGCTGCAAGTCCT GAGGATTGGAAACAACTTATTATCAGGGGAAATCCCATCAACAATTGGCGGTTTGACCGAGTTAAGAGAACTTGGTCTCGCCTTCTGCCAATTAAACGAG AGCATTCCGGTCGAGCTTGGGAATCTTAAGAACATGGTCTCTCTTTTCTTGGAAAACAATGAACTCCAAGGGCTCATTCCAGAAGAGATTGGTGGGTGGG AAAAGCTCCAAACTTTGGCTGCATCAAACAACAAGCTTGAAGGAAAAATACCAGCTTCAATAGGGAGACTTACTTCGTTGGTAATATTGAACTTGGCCAA CAACAGCCTTTCAGGTTCAGTCCCTACTGAATTAAGTCATCTCTCCACTTTGCAGCACCTCAACTTGCTAGGTAATAGACTGAACGGCTCGATCCCTCCT GAACTTAACCGGTTGACTCAGCTCCAGAGGCTTGACTTATCATTCAACAGTCTTTCAGGAACATTGGTTGTGTCTGGTAACAATCTTGAAACATTGGTTG TGTCTGGTAACAACCTGACAGGAACCGTTCTCAGTAATTTCTGCAACACCACAAGTGGTTCGAAGCTTCAACAGCTCTTTCTTGCTCAAAATCAACTATC TGGAGAATTTCCTCTGGAACTACTTAATTGTCGGTCACTCCAGCAATTAGACCTCTCGGATAACGACTTTCGAGGAGAGCTGCCTTCTGTCATTGACAGG CTGCAGAACCTGACAGATCTTTTGATCCAGAATAACAGCTTCATCGGTCAGATACCTTCTTCAGTTGGAAACATAACCAGGTTGGAGAATCTCTATCTGT TTGATAATTTAATCACAGGAAGACTCCCTCCAGAAATCGGGAGGCTACAAAGGCTGACCAACATCTATCTCTACGATAACCAGATGTCAGGAGATATTCC AAGGGAGCTAACTAACTGCACAAAGTTGACTGAAATCGATTTCTTTGGTAACCGTTTTTCCGGGTCGATTCCTGAGACTATTGGGAATCTCAAGGAACTT GTTATGCTACAACTGAGGCAGAATGATTTGTCAGGTCCAATCCCACCAAGCTTAGGTTACTGCAGAAGCCTCCAGATATTAGCCTTGGCTGATAACAAGC TTTCAGGAACACTGCCACCAACTTTCAGGCTCCTTTCACTACTCTACAAAGCAACTCTTTATAATAACTCCTTTGATGGTCCTTTCCCCCAATCTCTTTC TCAACTGAAAAACCTACAAATCATCAATTTCTCCCACAACAGGTTCACTGGCAGCATTTCTCCACTCTTGGGATCAAATTCTTTGGCTGCATTGGACTTA ACCAACAACAGTTTTTCTGGACCAATCCCTTCTACACTAGCCTTGTCGACCAATCTCACCCGTCTTCGCCTAGCACACAATCACCTCACTGGAAATATCC CTCCGGAATTCGGCCAGCTTATCAATCTCCAGTTCCTGGATTTGTCCTTCAACAATCTGACAGGACAAGTGATTCCACAGCTTTCAAGCTGCCAAAAGCT TGAGCATTTCCTCCTCAACAATAACCAACTCACAGGAACTATGCCTTCTTGGTTAGGAAGCTTGGAAGAACTTGGTGAGCTACATCTCTCTTCAAATAAC CTTCAAGGGGAAATCCCAAAGGAAATCGGAAATTGCTCGAAATTGCTCAAGCTATCACTTCACAGTAATAGTCTATCAGGAAGGATCCCAGAGGAGTTAG GCAAGCTCACTTCTCTCAACGTGCTCAATCTTCAGAACAATAACCTGTCAGGAAACATCCCTTTAACAATTAAAGACTGCAAGAAGCTATTCGAGCTGAG GCTGTCTGAGAACAACCTGACAGGTTCAATTCCAGCAGAGCTTGGACAGTTGACAGAGCTGCAAGTGATCTTGGATCTCAGCCATAATTCTCTCTCCGGA AAGATTCCGTTGTCGCTCGGAAACCTGATCAAGCTGGAAAGGTTGAATCTTTCGACTAACCAGCTTCAGGGAGAAATACCCAGTTCGCTTATAAAGCTTA CCAGTCTCCACAGGCTTAACCTGTCAAATAACGACCTCCAGGGACGAATTCCTGACGAGTTTTCAGGATTCCCAATTGGGTCTTTTCTGGGGAATGAGGA GAATCTATGTGGTCGGCCATTGGAGAATTCCTGCTCGGGAGAATCAGGTAGGGAAAATAAGAAGCTGACGAATGGTGCTGTGGTGGGTATAATTTTTGTG ATCGTCTTCTCGTCGACAGTTGTATGCTTGTTGATGATATATGTAATGATGAGAATGTGGTGCCATTGGAGGGAAGTCTCAATATCTTCCATGGATGGTC GTGGTGGAAATTATCAGAGGAGACAAGTGAAAGAGAGGAAAGGTAATAATAATGGCGATCATGATCAATTCTGGAGGATGGGTTCTGCTGCAGGAACGGT GGCTGCACAAACATGTATGTTCCATTTCAAAATAGATCGTGAAGCAGCAGAAGAAATCTCCATTGCTTGA
AA sequence Show only first row Show all	>Lus10027688 pacid=23151265 polypeptide=Lus10027688 locus=Lus10027688.g ID=Lus10027688.BGIv1.0 annot-version=v1.0 MKTQGSSASKCKDRIFAMKFFMGSIVKALVLFIALILAVPASTVDADNTDWLLRIKSALVDPSGLLNNWSPEVHFCTWNGVYCSSSEDQIQVVGLNLSKS GLSGSIPSVLQHLVSLQTLDLSSNLLTGTIPEELGELHDLQVLLLYSNYLSGKIPREIGSLKKLQVLRIGNNLLSGEIPSTIGGLTELRELGLAFCQLNE SIPVELGNLKNMVSLFLENNELQGLIPEEIGGWEKLQTLAASNNKLEGKIPASIGRLTSLVILNLANNSLSGSVPTELSHLSTLQHLNLLGNRLNGSIPP ELNRLTQLQRLDLSFNSLSGTLVVSGNNLETLVVSGNNLTGTVLSNFCNTTSGSKLQQLFLAQNQLSGEFPLELLNCRSLQQLDLSDNDFRGELPSVIDR LQNLTDLLIQNNSFIGQIPSSVGNITRLENLYLFDNLITGRLPPEIGRLQRLTNIYLYDNQMSGDIPRELTNCTKLTEIDFFGNRFSGSIPETIGNLKEL VMLQLRQNDLSGPIPPSLGYCRSLQILALADNKLSGTLPPTFRLLSLLYKATLYNNSFDGPFPQSLSQLKNLQIINFSHNRFTGSISPLLGSNSLAALDL TNNSFSGPIPSTLALSTNLTRLRLAHNHLTGNIPPEFGQLINLQFLDLSFNNLTGQVIPQLSSCQKLEHFLLNNNQLTGTMPSWLGSLEELGELHLSSNN LQGEIPKEIGNCSKLLKLSLHSNSLSGRIPEELGKLTSLNVLNLQNNNLSGNIPLTIKDCKKLFELRLSENNLTGSIPAELGQLTELQVILDLSHNSLSG KIPLSLGNLIKLERLNLSTNQLQGEIPSSLIKLTSLHRLNLSNNDLQGRIPDEFSGFPIGSFLGNEENLCGRPLENSCSGESGRENKKLTNGAVVGIIFV IVFSSTVVCLLMIYVMMRMWCHWREVSISSMDGRGGNYQRRQVKERKGNNNGDHDQFWRMGSAAGTVAAQTCMFHFKIDREAAEEISIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10027688 [exp]	0	1
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Lus10002419 [exp]	1.7	0.9612
AT2G17080			Arabidopsis protein of unknown...		Lus10023965 [exp]	4.2	0.9537
AT5G56040			Leucine-rich receptor-like pro...		Lus10032954 [exp]	4.5	0.9432
AT2G45670			calcineurin B subunit-related ...		Lus10041384 [exp]	4.5	0.9403
AT5G14000	NAC	ANAC084	NAC domain containing protein ...		Lus10012557 [exp]	4.9	0.9403
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10018575 [exp]	5.7	0.9495
AT3G21710			unknown protein		Lus10039666 [exp]	9.9	0.9280
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Lus10039314 [exp]	10.2	0.9353
AT1G52800			2-oxoglutarate (2OG) and Fe(II...		Lus10008097 [exp]	10.4	0.9303
AT2G02061			Nucleotide-diphospho-sugar tra...		Lus10031330 [exp]	10.8	0.9290

Compare expression of checked genes

Lus10027688 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.