Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18050 45 / 2e-07 SAUR-like auxin-responsive protein family (.1) AT4G38825 45 / 3e-07 SAUR-like auxin-responsive protein family (.1) AT5G18020 44 / 4e-07 SAUR-like auxin-responsive protein family (.1) AT5G18080 44 / 7e-07 SAUR24 small auxin up RNA 24, SAUR-like auxin-responsive protein family (.1) AT4G38820 42 / 2e-06 unknown protein AT4G13790 42 / 3e-06 SAUR-like auxin-responsive protein family (.1) AT4G38850 42 / 4e-06 SAUR-AC1, ATSAUR15, ATSR15AU, SAUR15, SAUR_AC1 SMALL AUXIN UP RNA 1 FROM ARABIDOPSIS THALIANA ECOTYPE COLUMBIA, ARABIDOPSIS COLUMBIA SAUR GENE 1, ARABIDOPSIS THALIANA SMALL AUXIN UPREGULATED 15, SAUR-like auxin-responsive protein family (.1) AT2G21200 41 / 5e-06 SAUR-like auxin-responsive protein family (.1) AT4G31320 41 / 2e-05 SAUR-like auxin-responsive protein family (.1) AT3G03830 39 / 6e-05 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039962 [exp] 156 / 3e-51 AT5G18080 50 / 1e-09 small auxin up RNA 24, SAUR-like auxin-responsive protein family (.1) Lus10026294 [exp] 45 / 4e-07 AT4G34810 124 / 3e-38 SAUR-like auxin-responsive protein family (.1) Lus10033348 [exp] 45 / 1e-06 AT2G24400 155 / 3e-48 SAUR-like auxin-responsive protein family (.1) Lus10007561 [exp] 42 / 5e-06 AT4G34810 125 / 1e-38 SAUR-like auxin-responsive protein family (.1) Lus10012184 [exp] 41 / 1e-05 AT4G34810 125 / 9e-39 SAUR-like auxin-responsive protein family (.1) Lus10042378 [exp] 41 / 1e-05 AT4G34810 129 / 3e-40 SAUR-like auxin-responsive protein family (.1) Lus10027317 [exp] 40 / 2e-05 AT5G18030 119 / 1e-36 SAUR-like auxin-responsive protein family (.1) Lus10042376 [exp] 40 / 2e-05 AT4G34770 136 / 3e-43 SAUR-like auxin-responsive protein family (.1) Lus10042377 [exp] 40 / 4e-05 AT4G34810 120 / 6e-37 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G054600 [exp] 62 / 8e-14 AT4G31320 58 / 1e-11 SAUR-like auxin-responsive protein family (.1) Potri.004G164700 [exp] 46 / 7e-08 AT5G18020 122 / 8e-38 SAUR-like auxin-responsive protein family (.1) Potri.004G165450 [exp] 42 / 2e-06 AT4G38840 129 / 2e-40 SAUR-like auxin-responsive protein family (.1) Potri.004G165300 [exp] 42 / 3e-06 AT4G38840 130 / 6e-41 SAUR-like auxin-responsive protein family (.1) Potri.007G012800 [exp] 41 / 8e-06 AT4G34760 164 / 3e-54 SAUR-like auxin-responsive protein family (.1) Potri.009G126900 [exp] 41 / 9e-06 AT4G38840 131 / 1e-41 SAUR-like auxin-responsive protein family (.1) Potri.001G060400 [exp] 42 / 1e-05 AT5G50760 71 / 5e-15 SAUR-like auxin-responsive protein family (.1) Potri.006G070600 [exp] 41 / 2e-05 AT5G18060 61 / 6e-13 SAUR-like auxin-responsive protein family (.1) Potri.009G127300 [exp] 39 / 3e-05 AT2G21210 104 / 8e-31 SAUR-like auxin-responsive protein family (.1) Potri.008G003900 [exp] 40 / 5e-05 AT2G24400 110 / 1e-31 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10027690 pacid=23151275 polypeptide=Lus10027690 locus=Lus10027690.g ID=Lus10027690.BGIv1.0 annot-version=v1.0 ATGGAGATCAGTCTAGTGATGTCTGTGCTTCAGAAGTGGTGCGGAGTGAAACTGCAGCGGAGGAAGACAGAAGGGAGTAGGAGGAGGAGAGGATACATTG GGATGTACGTCGGGAAAGATGCGCAAAGGTATGAAGTTCCGGTGAAGTGGCTGGGGAAGCCGGCGGTGCAGGAGTTGATGAGGCGATCGGAGGATAACGT GGCTCTTCTAGATTACAAGATAGTAGGGCCCATGTCTCTTTCCTGCTCCGTCGATACATTCCACCGTGTCTTCTTCGACGTCCGTTAG
AA sequence Show only first row Show all	>Lus10027690 pacid=23151275 polypeptide=Lus10027690 locus=Lus10027690.g ID=Lus10027690.BGIv1.0 annot-version=v1.0 MEISLVMSVLQKWCGVKLQRRKTEGSRRRRGYIGMYVGKDAQRYEVPVKWLGKPAVQELMRRSEDNVALLDYKIVGPMSLSCSVDTFHRVFFDVR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18020			SAUR-like auxin-responsive pro...		Lus10027690 [exp]	0	1
					Lus10011637 [exp]	4.6	0.8648
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10031852 [exp]	7.5	0.8341
					Lus10034069 [exp]	9.0	0.8149
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10034348 [exp]	11.3	0.8107
AT1G65450			HXXXD-type acyl-transferase fa...		Lus10029920 [exp]	12.6	0.8107
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10008682 [exp]	13.9	0.8009
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10007909 [exp]	15.4	0.7979
					Lus10011276 [exp]	15.9	0.7862
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10011999 [exp]	16.7	0.7937
AT5G42540		AtXRN2, XRN2	exoribonuclease 2 (.1.2)		Lus10009577 [exp]	17.3	0.7822

Compare expression of checked genes

Lus10027690 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.