Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63000 252 / 6e-85 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039963 [exp] 380 / 3e-135 AT5G63000 269 / 1e-92 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G078600 [exp] 253 / 3e-85 AT5G63000 291 / 3e-101 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02466 [flax] [poplar] Tim17 Tim17/Tim22/Tim23/Pmp24 family
Representative CDS sequence Show only first row Show all	>Lus10027691 pacid=23151195 polypeptide=Lus10027691 locus=Lus10027691.g ID=Lus10027691.BGIv1.0 annot-version=v1.0 ATGGATCCCACGGAAGAGGCCGAAAACGCTGTGCCAGAGGGTTCCAAAGCTCCAATTCATCCTTCTGTTGGTATGCATGAAAACGTTCTTTCCGCTGAAT TTTTCACACAGGTGTCGAGGAAACTAGCGGGGACTGTTAGTTGGAGCTCAGCTACCCTTATCGGATTTTTCACAGGCATGATATATGGTGCTTCTAAGGA GGCCTCTGCATCCGCTGGGTCTAAAAAATTAGCGGGGACTGTTAGTTGGAGCTCAGCTACCCTTATCGGATTTTTCACAGGCATGATATATGGTGCTTCT AAGGAGGCCTCTGCATCCGCTAGCATAGATGCCGATGTAATGCTGAAGCTAGGAAGCACACCGAACAAGATGAAGCAGTATAACTTGATGAGAGATGCTA TGGAGAGACGATTCCTCAAGGTAAGTCAGGGAGCTTTGGTTGGTGGGATGCGACTCAGCATATTTACTGCTGCATTTTGTGGTCTGCAAAACTTGATGGC CGAGCAACGGGGTGTGCACGATGTTTTCAATGTCGTTGGAGCCGGTTCAGTCACTGCTGCTGCGTTTGGTCTAATCTTGCCTGGATCTCTTCAGTGGCGT GCTAGGAATGTGCTACTTGGATCAACTCTTGGCGCAGCAGTGTGTTTTCCCCTAGGTTGGATCCAGATGAAGTTGGTGGAGAAGGCAAATGAAGGGAACA TGACTGGCGATCGTAGTTCCTCCAACACAAAGGGTGGTGTGGGAGCTGCAATTGAGAGGCTTGAAGCAAAAGTGAAGAGAGACCAAGATACTTGA
AA sequence Show only first row Show all	>Lus10027691 pacid=23151195 polypeptide=Lus10027691 locus=Lus10027691.g ID=Lus10027691.BGIv1.0 annot-version=v1.0 MDPTEEAENAVPEGSKAPIHPSVGMHENVLSAEFFTQVSRKLAGTVSWSSATLIGFFTGMIYGASKEASASAGSKKLAGTVSWSSATLIGFFTGMIYGAS KEASASASIDADVMLKLGSTPNKMKQYNLMRDAMERRFLKVSQGALVGGMRLSIFTAAFCGLQNLMAEQRGVHDVFNVVGAGSVTAAAFGLILPGSLQWR ARNVLLGSTLGAAVCFPLGWIQMKLVEKANEGNMTGDRSSSNTKGGVGAAIERLEAKVKRDQDT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63000			Mitochondrial import inner mem...		Lus10027691 [exp]	0	1
AT1G20770			unknown protein		Lus10030736 [exp]	7.3	0.8057
AT4G17190		FPS2	farnesyl diphosphate synthase ...		Lus10022545 [exp]	7.7	0.8373
AT2G45320			unknown protein		Lus10030280 [exp]	7.9	0.8151
AT3G05870		APC11	anaphase-promoting complex/cyc...		Lus10015126 [exp]	8.1	0.8298
AT3G11500			Small nuclear ribonucleoprotei...		Lus10021342 [exp]	10.8	0.8354
AT5G56670			Ribosomal protein S30 family p...		Lus10017473 [exp]	19.4	0.8293
AT3G08980			Peptidase S24/S26A/S26B/S26C f...		Lus10002492 [exp]	19.6	0.7756
AT5G59240			Ribosomal protein S8e family p...		Lus10016587 [exp]	20.2	0.7930
AT1G67080		ABA4	abscisic acid (aba)-deficient ...		Lus10028476 [exp]	20.7	0.7772
AT5G63010			Transducin/WD40 repeat-like su...		Lus10039042 [exp]	21.7	0.8243

Compare expression of checked genes

Lus10027691 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.