Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62960 333 / 6e-114 unknown protein AT1G10660 275 / 2e-91 unknown protein AT3G27770 229 / 2e-73 unknown protein AT2G47115 208 / 1e-65 unknown protein AT1G70505 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042109 [exp] 437 / 4e-155 AT5G62960 397 / 1e-138 unknown protein Lus10039964 [exp] 389 / 5e-134 AT5G62960 247 / 7e-78 unknown protein Lus10002386 [exp] 343 / 1e-118 AT5G62960 320 / 5e-109 unknown protein Lus10029133 [exp] 275 / 3e-90 AT1G10660 338 / 5e-115 unknown protein Lus10014556 [exp] 267 / 5e-88 AT5G62960 305 / 3e-102 unknown protein Lus10032130 [exp] 265 / 4e-87 AT5G62960 303 / 2e-101 unknown protein Lus10038056 [exp] 214 / 6e-68 AT1G10660 252 / 1e-82 unknown protein Lus10009991 [exp] 203 / 2e-63 AT1G10660 246 / 3e-80 unknown protein Lus10013029 [exp] 203 / 8e-60 AT1G23400 658 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G078200 [exp] 389 / 3e-136 AT5G62960 382 / 8e-133 unknown protein Potri.012G082400 [exp] 384 / 3e-134 AT5G62960 387 / 1e-134 unknown protein Potri.010G042600 [exp] 339 / 2e-116 AT1G10660 372 / 1e-129 unknown protein Potri.001G347400 [exp] 288 / 3e-96 AT3G27770 314 / 9e-107 unknown protein Potri.014G115200 [exp] 229 / 3e-73 AT2G47115 340 / 4e-117 unknown protein Potri.002G190200 [exp] 227 / 2e-72 AT2G47115 344 / 1e-118 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027692 pacid=23151231 polypeptide=Lus10027692 locus=Lus10027692.g ID=Lus10027692.BGIv1.0 annot-version=v1.0 ATGAGCTTTTTATCAGGATCAACAGAGGATACATGGCATCCAGTGATGACAGGGGACACAACAATGGCCAGTTACTGGCTCAACTGGAGGTTCTTTCTGT GTGCATCATGGATATTAGTATCATTGAGCTTAGCATTGGTATTGATATGGAGAAAAGAGCAGAATTTTACAATTGAAGAAGAAGAAGAGGGGTTTATGTA CGATGATCAAGCTTGGATGCCATGCCTTAAAGGAGTACATCCAGCTTGGCTTCTATCTTTCAGGATCTGTGCATTTTTAGTACTCTTGCTTCTCCTCGTT GCTTCTGTTCATGAAGATGGCAACACCATTTTTTACTACTATACTCAGTGGACATTTACTTTGGTCACTTTATATTTCGCTATGGGGTGTTTGATATCAA TTCGTGGATGTTCAAAGTATCAGCAGAGGGTTAGTCGAGATAAGGTTGGCGATGTAGAGTTAGATGCAGTTGAGGATCGACAGCCTGCTGGGATATTTGT TTATGCCTTTCAGATAATTTTCCAGATAAATGCTGGAGCAGTGATGCTGACAGATTGCGTGTTTTGGTTCATAATCGTCCCCTTTCTTGCGATCAAAGAT TTCCATCTCAATCCCTTGACTATAAGTATGCATTCAATGAACGCCTTCTTCTTGCTTGGAGACACTTCCATGAACTGCATGCCATTCCCATTCTTTAGGA TTGCATATTTCATCCTCTGGACCATCATTTACGTGCTGTTCCAGTGGATTCTACACGCTTCTGTCCGAATATGGTGGCCGTACCCATTCCTCGACATTTC ATCTCCTTATGTCCCCTTATGGTACTTGGCGGTTGCCATGATGCACATCCCTTGCTATGGCGTGTTTGCTTTCATTGTCAAGCTCAAGAACACATGGTTC ACCAGATGGTTCGTTGACTCGTATCAGGGCCGGAGCTAG
AA sequence Show only first row Show all	>Lus10027692 pacid=23151231 polypeptide=Lus10027692 locus=Lus10027692.g ID=Lus10027692.BGIv1.0 annot-version=v1.0 MSFLSGSTEDTWHPVMTGDTTMASYWLNWRFFLCASWILVSLSLALVLIWRKEQNFTIEEEEEGFMYDDQAWMPCLKGVHPAWLLSFRICAFLVLLLLLV ASVHEDGNTIFYYYTQWTFTLVTLYFAMGCLISIRGCSKYQQRVSRDKVGDVELDAVEDRQPAGIFVYAFQIIFQINAGAVMLTDCVFWFIIVPFLAIKD FHLNPLTISMHSMNAFFLLGDTSMNCMPFPFFRIAYFILWTIIYVLFQWILHASVRIWWPYPFLDISSPYVPLWYLAVAMMHIPCYGVFAFIVKLKNTWF TRWFVDSYQGRS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62960			unknown protein		Lus10027692 [exp]	0	1
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10037650 [exp]	7.3	0.8304
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10011737 [exp]	10.0	0.7864
AT5G46530			AWPM-19-like family protein (....		Lus10011973 [exp]	10.5	0.8349
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10015456 [exp]	13.9	0.8238
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Lus10005995 [exp]	14.5	0.7906
AT2G17150		NLP1	Plant regulator RWP-RK family ...		Lus10022621 [exp]	15.3	0.7688
AT1G71692	MADS	XAL1, AGL12	XAANTAL1, AGAMOUS-like 12 (.1)		Lus10009472 [exp]	15.7	0.8129
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10015632 [exp]	15.9	0.7962
AT5G47510			Sec14p-like phosphatidylinosit...		Lus10007464 [exp]	17.2	0.8301
AT3G06240			F-box family protein (.1)		Lus10026587 [exp]	19.7	0.7496

Compare expression of checked genes

Lus10027692 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.