Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06110 49 / 2e-06 SKIP16 SKP1/ASK-interacting protein 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039964 [exp] 453 / 3e-159 AT5G62960 247 / 7e-78 unknown protein Lus10004805 [exp] 51 / 4e-07 AT1G06110 542 / 0.0 SKP1/ASK-interacting protein 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G078100 [exp] 362 / 2e-126 AT1G06110 48 / 3e-06 SKP1/ASK-interacting protein 16 (.1) Potri.012G082300 [exp] 353 / 3e-123 ND / Potri.017G027000 [exp] 61 / 2e-10 AT1G06110 545 / 0.0 SKP1/ASK-interacting protein 16 (.1) Potri.007G130900 [exp] 58 / 3e-09 AT1G06110 557 / 0.0 SKP1/ASK-interacting protein 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0671 [flax] [poplar] AAA_lid PF02151 [flax] [poplar] UVR UvrB/uvrC motif CL0159 [flax] [poplar] E-set PF04379 [flax] [poplar] DUF525 ApaG domain
Representative CDS sequence Show only first row Show all	>Lus10027693 pacid=23151283 polypeptide=Lus10027693 locus=Lus10027693.g ID=Lus10027693.BGIv1.0 annot-version=v1.0 ATGAATACGCTGAATCTAAAATTGTATCCAGATTTTGGAGTCAGCGACAGGAGGAGCCGCGGAAGCTCCTCCTCTTCTGATCTTGACGGAAAGCGCTTGT CGCTGAGCTTGAAAAGCTATCCGCGGAGGAGCTGGAGGTGTCGTATTGTCGCGTGTGCGGCGGAGCGAAGTGGCAATTGGGACGGCGGCGAAACGACTTC TTCTTCCAGTTCCGAAGCGGCTGGATCTTTGGCAAATTCGTTCTTGAAACGGAGCCAGACGTACGCTTTGCTCAAGCAGCAGATGGTGGTCGCCGCACAA GCTGAGGACTACAAAGAAGCTGCGAGAATTCGAAATTCCTTGAGAATCTTCGAGGAAGAGGAGCCTCTTCTTCGGCTTCGTCAACAATTAAAGGATGCAA TCAAAGACGAACGTTTCGAGGATGCAGCCAAGTACCGTGATGCGCTAAACCAACTTGCACCACATTCCCTCTTGAAATGTTCAAGTGATGCGACCACTCT GGGGATCAGAGTTCAAGTAAGGAGTGTTTACATCGAGAGTCGTAGTCAGCCGTTGAAAGGACAGTACTTCTTTGCATATAGAATACGGATCACCAATAAC TCAAACCGTCCTGTTCAACTTCTCAGAAGACATTGGATCATCACAGATGCTAACGGGAAGACTGAGAATGTTTGGGGAATGGGCGTAATAGGTGAGCAGC CAGTAATACTGCCAAACACAGGCTTTGAATACTCGTCCGCGTGCCCATTATCAACTCCTAACGGTAGAATGGAAGGCGACTTTGAGATGAAACACATAGA CAAAGTAGGGTCTGCGTCATTCAACGTGGGTATTGCACCTTTTTCTCTGTCAACGCTGGGGAATGGAAGTGATCTTGTATGA
AA sequence Show only first row Show all	>Lus10027693 pacid=23151283 polypeptide=Lus10027693 locus=Lus10027693.g ID=Lus10027693.BGIv1.0 annot-version=v1.0 MNTLNLKLYPDFGVSDRRSRGSSSSSDLDGKRLSLSLKSYPRRSWRCRIVACAAERSGNWDGGETTSSSSSEAAGSLANSFLKRSQTYALLKQQMVVAAQ AEDYKEAARIRNSLRIFEEEEPLLRLRQQLKDAIKDERFEDAAKYRDALNQLAPHSLLKCSSDATTLGIRVQVRSVYIESRSQPLKGQYFFAYRIRITNN SNRPVQLLRRHWIITDANGKTENVWGMGVIGEQPVILPNTGFEYSSACPLSTPNGRMEGDFEMKHIDKVGSASFNVGIAPFSLSTLGNGSDLV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06110		SKIP16	SKP1/ASK-interacting protein 1...		Lus10027693 [exp]	0	1
AT4G27800		TAP38, PPH1	PROTEIN PHOSPHATASE 1, thylako...		Lus10005908 [exp]	1.4	0.8927
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10010517 [exp]	2.0	0.8885
AT4G33630		EX1	EXECUTER1, Protein of unknown ...		Lus10007064 [exp]	2.6	0.8627
					Lus10019158 [exp]	3.5	0.8628
AT5G46560			unknown protein		Lus10011046 [exp]	4.5	0.8666
AT5G08010			unknown protein		Lus10040520 [exp]	5.2	0.8762
AT1G67280			Glyoxalase/Bleomycin resistanc...		Lus10011115 [exp]	6.3	0.8602
AT5G61040			unknown protein		Lus10021155 [exp]	9.9	0.8592
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10036245 [exp]	10.0	0.8219
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Lus10026573 [exp]	10.0	0.8528

Compare expression of checked genes

Lus10027693 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.