Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27510 632 / 0 Protein of unknown function (DUF3506) (.1) AT4G33630 351 / 8e-112 EX1 EXECUTER1, Protein of unknown function (DUF3506) (.1), Protein of unknown function (DUF3506) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039967 [exp] 1182 / 0 AT1G27510 621 / 0.0 Protein of unknown function (DUF3506) (.1) Lus10042125 [exp] 520 / 1e-178 AT1G27510 358 / 7e-116 Protein of unknown function (DUF3506) (.1) Lus10007064 [exp] 334 / 5e-105 AT4G33630 667 / 0.0 EXECUTER1, Protein of unknown function (DUF3506) (.1), Protein of unknown function (DUF3506) (.2) Lus10002370 [exp] 182 / 1e-51 AT1G27510 164 / 2e-45 Protein of unknown function (DUF3506) (.1) Lus10020435 [exp] 189 / 4e-51 AT4G33630 655 / 0.0 EXECUTER1, Protein of unknown function (DUF3506) (.1), Protein of unknown function (DUF3506) (.2) Lus10027693 [exp] 44 / 0.0002 AT1G06110 49 / 2e-06 SKP1/ASK-interacting protein 16 (.1) Lus10039964 [exp] 43 / 0.0008 AT5G62960 247 / 7e-78 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G079700 [exp] 835 / 0 AT1G27510 599 / 0.0 Protein of unknown function (DUF3506) (.1) Potri.015G075000 [exp] 819 / 0 AT1G27510 582 / 0.0 Protein of unknown function (DUF3506) (.1) Potri.017G043100 [exp] 362 / 5e-116 AT4G33630 674 / 0.0 EXECUTER1, Protein of unknown function (DUF3506) (.1), Protein of unknown function (DUF3506) (.2) Potri.015G078100 [exp] 48 / 1e-05 AT1G06110 48 / 3e-06 SKP1/ASK-interacting protein 16 (.1) Potri.012G082300 [exp] 43 / 0.0006 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0671 [flax] [poplar] AAA_lid PF02151 [flax] [poplar] UVR UvrB/uvrC motif CL0671 [flax] [poplar] PF12014 [flax] [poplar] DUF3506 Domain of unknown function (DUF3506)
Representative CDS sequence Show only first row Show all	>Lus10027696 pacid=23151295 polypeptide=Lus10027696 locus=Lus10027696.g ID=Lus10027696.BGIv1.0 annot-version=v1.0 ATGGCCGGGTCAAATCTCTGCTTCGTCGGCTGCCAACCTGTATCAACGGCGCCTCAATTGACGCCCCTCTGTTGCCTTGATTCCTCAATTAAGAAGCCTA CCACTGCCAACTTGGCTCTCGTTTCTGGTCTCGCTTGGAACCGTCTTCTTCATCACAGCTACTCCAAGCTCAGAACTCGCAACAACTTTGTCAATTTTCG GAGATGCCGCTGCGTTGGCGGTAGTATCAATGCGGAGAAGAGGACTACCAATGATGTTTGCTCCTCTCTATATTCTTCTCTCGATTGGGATTGGAGCAGA TGGGGACGTCATTTCGCTGAGATCGAACGAGCTGAGAGTTTCGCCTCTGTTCTCAAGTTTCAACTAGAAGAAGCAATTGAAAAGGAAGACTTCCAGGAAG CAGCAAAATTGAAGAACACAATTGCTGAAGCTACTTCGATGGATAGTGTAGCTGAAATCATGTCGGAACTCAAGAATGCAATTGATGAAGAGCGCTACCA TGATGCTTCAAGGTTATGTAAACACACTGGAAGTGGATTGGTAGGATGGTGGGTGGGTTATTCAACAGATTCCACTGATCCTTTTGGAAGACTTGTTCGT ATCACACCTGGCATGGGAAGATTTGTTGCCAAGAGTTATACTCCAAGGCAGTTGGTTAATGCATCATCCGGTACTCCTTTGTTTGAGATATTTGTTGTCA AAGATACAGATGAAAGTTATGTGATGCAAGTAGTTTGGCTTCGAGCCAAAGCAAGTTTGACAACTTCAACGTCTAAATATGTAAAACCATCAATATCTGA GGCGGAAAATGCACTGGAAGATGTCAAGAAAAATGAAGTTAAGCAAGAGGGAACTGAAGAAAAAGGTATAGATATCGAGGGTGCAACTGAGGAGGGAATT AAAAGTGTGATAAATTTTCTTAAAGATAAAATTCCAGGGTTGAAAGTAAATGTTATGAATGTTAATGTTTCTGGAGAAGTGGTGGAGGATGATGATTCTA TGAAGCAGTTGATTGAAGATGAGGATGAAAACACAGTGTTGACTGAAGACTCTGAAGATGAATCTGAGAAGTTGGAAGAGATTCAGCCGGATGGTATTTC GCTGTTGGATAGTAGTGACTCAGAGGATGGGAAGGATCTCGATATGAAACTTTTTATCGGTGGAGTAGTGCATGAGGATAGTCCTGTGAAGAATGATTAC TCCCGTGTCCCAGCTGAGATCAAAGATGTAGAGAAAGATTCTTTTGTCTTACACATCCCTCGGAGACATTTAGACTATGTCAATTCAGATAGTAAGCCAT CCAAGTTGAAAGTGGCAGCCATTGCAGCTAAAGGTGTTACTGAACTTATGCCTCCAGATGTAGCGAAGGCATTCTGGGGTGGTGACAAACTTTCTTCAAA GGTTTCCAGGAACGTGCGTGAAATATTCAAACTTGCTGTTAGCCAGGCTCAGAAAGAAAGTAGATTGTCAGAGAATACAAACTTCTCCAGAATTTCAAAT ACTAACAACAATCTAGATCCATTTGATGGCCTATATGTTGGTGCTTTCGGCCCTTATGGAACAGAGGTTGTTCAGTTGAAGCGTAAATATGGTCGCTGGA GTAATGGAAAGGACTCCTCTGATATGGAGTTCTTCGAGTACGTTGAGGCAGTGAAGTTGACTGGGGATCTAAATGTTCCTGCTGGCCAGGTAACATTTCG TGCCAAAATTGGGAAAGGGACTCGCAATTCCAACCGTGGGATGTATCCTGATGAACTAGGAGTGGTGGCGAGTTACAAAGGTGAAGGCAGAATAGCAAAC TTTGGGTTCAAAAACCCGAAATGGGTAGAAGGAGAACTTCTTCAGCTGAACAGCAAGGGAATTGGACCGTATGTGAAAGGTGCAGATCTTGGATTCCTGT ATGTTGTACCAGAGCAAAGCTTCTTGGTTCTGTTCAACCGGCTGACATTGCCCGAATAA
AA sequence Show only first row Show all	>Lus10027696 pacid=23151295 polypeptide=Lus10027696 locus=Lus10027696.g ID=Lus10027696.BGIv1.0 annot-version=v1.0 MAGSNLCFVGCQPVSTAPQLTPLCCLDSSIKKPTTANLALVSGLAWNRLLHHSYSKLRTRNNFVNFRRCRCVGGSINAEKRTTNDVCSSLYSSLDWDWSR WGRHFAEIERAESFASVLKFQLEEAIEKEDFQEAAKLKNTIAEATSMDSVAEIMSELKNAIDEERYHDASRLCKHTGSGLVGWWVGYSTDSTDPFGRLVR ITPGMGRFVAKSYTPRQLVNASSGTPLFEIFVVKDTDESYVMQVVWLRAKASLTTSTSKYVKPSISEAENALEDVKKNEVKQEGTEEKGIDIEGATEEGI KSVINFLKDKIPGLKVNVMNVNVSGEVVEDDDSMKQLIEDEDENTVLTEDSEDESEKLEEIQPDGISLLDSSDSEDGKDLDMKLFIGGVVHEDSPVKNDY SRVPAEIKDVEKDSFVLHIPRRHLDYVNSDSKPSKLKVAAIAAKGVTELMPPDVAKAFWGGDKLSSKVSRNVREIFKLAVSQAQKESRLSENTNFSRISN TNNNLDPFDGLYVGAFGPYGTEVVQLKRKYGRWSNGKDSSDMEFFEYVEAVKLTGDLNVPAGQVTFRAKIGKGTRNSNRGMYPDELGVVASYKGEGRIAN FGFKNPKWVEGELLQLNSKGIGPYVKGADLGFLYVVPEQSFLVLFNRLTLPE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27510			Protein of unknown function (D...		Lus10027696 [exp]	0	1
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10038385 [exp]	1.4	0.9363
AT3G47570			Leucine-rich repeat protein ki...		Lus10004827 [exp]	2.0	0.8855
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10027532 [exp]	3.2	0.9084
AT4G03140			NAD(P)-binding Rossmann-fold s...		Lus10005927 [exp]	3.5	0.8612
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10002108 [exp]	3.6	0.8611
AT3G15690			Single hybrid motif superfamil...		Lus10023118 [exp]	3.9	0.8958
AT5G14120			Major facilitator superfamily ...		Lus10023961 [exp]	4.0	0.8736
AT1G27510			Protein of unknown function (D...		Lus10002370 [exp]	4.5	0.8847
AT1G42540		ATGLR3.3	glutamate receptor 3.3 (.1)		Lus10013838 [exp]	4.9	0.8426
AT3G26740		CCL	CCR-like (.1)		Lus10012569 [exp]	7.1	0.8493

Compare expression of checked genes

Lus10027696 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.