Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52580 493 / 3e-172 RabGAP/TBC domain-containing protein (.1.2) AT4G28550 138 / 1e-37 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G20440 134 / 8e-36 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT4G27100 130 / 2e-34 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G54780 129 / 3e-34 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G41940 123 / 3e-31 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G53570 119 / 8e-30 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT3G49350 117 / 2e-29 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G24390 110 / 8e-27 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT3G59570 105 / 4e-25 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039968 [exp] 604 / 0 AT5G52580 867 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10038091 [exp] 523 / 0 AT5G52580 938 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10006646 [exp] 521 / 0 AT5G52580 939 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10022905 [exp] 134 / 8e-36 AT4G28550 621 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10024920 [exp] 132 / 3e-35 AT4G28550 618 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10023237 [exp] 125 / 3e-32 AT5G41940 571 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10022356 [exp] 123 / 2e-31 AT3G49350 650 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10008872 [exp] 123 / 3e-31 AT5G41940 582 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10043064 [exp] 122 / 6e-31 AT2G20440 630 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G066300 [exp] 511 / 1e-179 AT5G52580 925 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.018G127500 [exp] 492 / 5e-172 AT5G52580 917 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.005G227400 [exp] 137 / 5e-37 AT4G28550 616 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.015G007400 [exp] 119 / 4e-30 AT5G41940 596 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.011G135300 [exp] 117 / 1e-29 AT4G27100 667 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.001G419100 [exp] 117 / 1e-29 AT5G54780 663 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.012G024500 [exp] 117 / 2e-29 AT3G49350 601 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.001G084300 [exp] 113 / 8e-28 AT5G41940 603 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.003G146300 [exp] 112 / 1e-27 AT5G41940 624 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.017G023200 [exp] 107 / 8e-26 AT2G43490 795 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [flax] [poplar] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Lus10027697 pacid=23151201 polypeptide=Lus10027697 locus=Lus10027697.g ID=Lus10027697.BGIv1.0 annot-version=v1.0 ATGGATTCAAAAGGCTTAAGAAGAAGGATATTCTATGGAGGAATAGATCACACAATAAGGAAAGAGGTTTGGCCCTTTTTAGTGGGATATTATGATTATG AATCAACACGTGCAGAGAGGGTGTACCTTAAGATGTATAAGTGGACAGAGTATCAAACAATAAAGACACAGTGGCAGAGTATCTCCCCTGAGCAAGCCAA GAGATTTACAAAATACAACGAACGGAAAGGACTCATCGACAAAGACGTGGTGAGGACGGACAGATCGCTACCCTTCTATGAAGGAGATGATAACCCAAAT ATAAAAACGCTACATGATATTCTGTTGACATACTCATTTTATAACTTTGATCTTGGCTACTGTCAGGGTATGAGTGATATACTATCTCCGATTTTGTACG TGACTGAGGATGAATCAGAATCATTTTGGTGTTTTGTGTCATTGATGGAACGCCTTGCACCAAATTTTAATCGGGACCAAAATGGCATACACTCTCAACT GTTTGCAGTTTCTAAGTTGGTAGAATTGTTAGACATCCCATTGCAGAACTACTTGGAGCAAAATGACTGCTTGAATTACTTCTTCTGCTTCCGCTGGCTT CTGATCCAATTTAAAAGGGAGTTTGAATACGAGCAAATAATGTGCCTATGGGAGGTGTTATGGACGCACCATTTGACGGAGCACCTGCATCTTTACTTGT GTGTTGCAATCTTGAAGCGATGCCGCAACAAAATCATGGGGGAGCAGATGGATTTCGACACGCTGTTGAAATTCATCAATGAACTAAGTGGCCATATCAA CCTGGATCCGTTGCTGAGGGATGCTGAGGCGCTGTGCATATATGCTGGCGAGAACGGTGCTGCTCGTATACCACCAGGTACTCCTCCTTCATTGCCTGTG GAAAACGAAAGTAGCTTGCTATATTCCCTGGAGGACGAAGTTCTGTAA
AA sequence Show only first row Show all	>Lus10027697 pacid=23151201 polypeptide=Lus10027697 locus=Lus10027697.g ID=Lus10027697.BGIv1.0 annot-version=v1.0 MDSKGLRRRIFYGGIDHTIRKEVWPFLVGYYDYESTRAERVYLKMYKWTEYQTIKTQWQSISPEQAKRFTKYNERKGLIDKDVVRTDRSLPFYEGDDNPN IKTLHDILLTYSFYNFDLGYCQGMSDILSPILYVTEDESESFWCFVSLMERLAPNFNRDQNGIHSQLFAVSKLVELLDIPLQNYLEQNDCLNYFFCFRWL LIQFKREFEYEQIMCLWEVLWTHHLTEHLHLYLCVAILKRCRNKIMGEQMDFDTLLKFINELSGHINLDPLLRDAEALCIYAGENGAARIPPGTPPSLPV ENESSLLYSLEDEVL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52580			RabGAP/TBC domain-containing p...		Lus10027697 [exp]	0	1
AT4G20300			Protein of unknown function (D...		Lus10038379 [exp]	5.7	0.8655
AT2G38900			Serine protease inhibitor, pot...		Lus10035626 [exp]	5.9	0.8709
AT5G63380			AMP-dependent synthetase and l...		Lus10036994 [exp]	9.0	0.8515
AT1G71790			Subunits of heterodimeric acti...		Lus10003086 [exp]	9.9	0.8546
AT3G50520			Phosphoglycerate mutase family...		Lus10026068 [exp]	10.1	0.8306
AT5G05987		PRA1.A2	prenylated RAB acceptor 1.A2 (...		Lus10030160 [exp]	12.5	0.8564
AT5G64010			unknown protein		Lus10035852 [exp]	14.7	0.8498
AT4G14340		CKL11, CKI1	CASEIN KINASE I-LIKE 11, casei...		Lus10021175 [exp]	14.7	0.8651
AT3G19770		ATVPS9A	ARABIDOPSIS THALIANA VACUOLAR ...		Lus10035376 [exp]	21.8	0.8620
AT3G26730			RING/U-box superfamily protein...		Lus10035163 [exp]	23.8	0.8144

Compare expression of checked genes

Lus10027697 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.