Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52580 300 / 2e-96 RabGAP/TBC domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039968 [exp] 597 / 0 AT5G52580 867 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10006646 [exp] 436 / 2e-149 AT5G52580 939 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10038091 [exp] 429 / 7e-147 AT5G52580 938 / 0.0 RabGAP/TBC domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G066300 [exp] 339 / 1e-111 AT5G52580 925 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.018G127500 [exp] 328 / 3e-107 AT5G52580 917 / 0.0 RabGAP/TBC domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF12068 [flax] [poplar] PH_RBD Rab-binding domain (RBD)
Representative CDS sequence Show only first row Show all	>Lus10027698 pacid=23151216 polypeptide=Lus10027698 locus=Lus10027698.g ID=Lus10027698.BGIv1.0 annot-version=v1.0 ATGATGACCAGAACCGAGAGCGAAAATAGGAATATGTGCACCGAGCCGGAAGGCGCTGAGGTGATTTATTTGAAGGATAATGTCACGATTCATCCTACGC AGTTCGCTTCCGAGAGGATCAGCGGGAGATTGAAGCTGGTTAAGCAAGGAAGCTTGGTGTCTATGACATGGATTCCATACCGAGGACAAAGCTCAAATGC CAGGCTCACTGAGAAAGATAGGAACCTGTACACGATCAGAGCTGTACCTTTCACGGATGTACGCTCTGTTCGTCGGCATACTCCAACTCTTGGGTGGCAA TACATAATTATTGTTCTATCATCAGGACTTGCATTTCCTCCTCTTTATTTCTACAATGGAGGTGTCAAGGAGTTTTTTGCTACATTGAAGCAGCATGTTC TGTTTGTCAGGTCATTGAAAGATGCAAATATATACCTTGTGAACGATTTTGAGAGTCCTCTACAGAGAACTCTGTCATCCTTGGAAATGCCTGGGGCTGT TTCCATTGGAAGTATGCCAAGTACCCCACATTCAGGTGGTCAATCATTGTTAGTTACAGATGCTGGTAAAAATGGTGAAGCTCTTCCTCGAAGCATTTTG AAGTACAGGCAGAAAGTTAGTGACCCTGGTCGTGATCTTCATGTTCAAGTACTTGAAAAATTCTCTCTTGTGACCAAATTTGCTCGAGAAACAACACAGC TATTCCGTGAAAATAGCAATGGTTTTCGTGCTCCTGATACAAAAAAATACAGACTTCCCCGCCCTGATGCCCCTTACAAGGAAGAACTAAAGAAGAAGAT AGATCATGCCCCTTACGGGGAGAAACCAGAGAAGAACATAGCTTATGACCCTTACCAAGAAGAGACAGGAAAGAAGATGATAGTTGATGAAGAAGCTCAC GTTCCTTCAGATCCATTGGAGGTGAGTTTTCCTCTTTTAGACTCAGTTTTCTTTAGTTATATAGATGCTGGTTGGGAAAACTTGGAACCCAATCAGATGA ACATTGGACCTTGCTTGCAAAGATCACTATGCTTTTGA
AA sequence Show only first row Show all	>Lus10027698 pacid=23151216 polypeptide=Lus10027698 locus=Lus10027698.g ID=Lus10027698.BGIv1.0 annot-version=v1.0 MMTRTESENRNMCTEPEGAEVIYLKDNVTIHPTQFASERISGRLKLVKQGSLVSMTWIPYRGQSSNARLTEKDRNLYTIRAVPFTDVRSVRRHTPTLGWQ YIIIVLSSGLAFPPLYFYNGGVKEFFATLKQHVLFVRSLKDANIYLVNDFESPLQRTLSSLEMPGAVSIGSMPSTPHSGGQSLLVTDAGKNGEALPRSIL KYRQKVSDPGRDLHVQVLEKFSLVTKFARETTQLFRENSNGFRAPDTKKYRLPRPDAPYKEELKKKIDHAPYGEKPEKNIAYDPYQEETGKKMIVDEEAH VPSDPLEVSFPLLDSVFFSYIDAGWENLEPNQMNIGPCLQRSLCF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52580			RabGAP/TBC domain-containing p...		Lus10027698 [exp]	0	1
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Lus10012149 [exp]	1.7	0.9247
AT3G14910			unknown protein		Lus10043078 [exp]	4.5	0.8996
AT2G32970			unknown protein		Lus10035309 [exp]	15.0	0.8754
AT5G45190			Cyclin family protein (.1.2)		Lus10021927 [exp]	17.7	0.8664
AT3G59660			C2 domain-containing protein /...		Lus10027067 [exp]	17.7	0.8761
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10001377 [exp]	19.6	0.8215
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Lus10014827 [exp]	21.1	0.8813
AT3G14205			Phosphoinositide phosphatase f...		Lus10037446 [exp]	21.8	0.8489
AT5G38710			Methylenetetrahydrofolate redu...		Lus10034095 [exp]	23.4	0.8251
AT3G11440	MYB	AtMYB65	myb domain protein 65 (.1)		Lus10026142 [exp]	24.7	0.8730

Compare expression of checked genes

Lus10027698 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.