Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G32440 249 / 2e-82 Ubiquitin system component Cue protein (.1.2.3) AT1G80040 171 / 6e-52 unknown protein AT5G02510 99 / 4e-25 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027700 [exp] 551 / 0 AT5G32440 262 / 2e-87 Ubiquitin system component Cue protein (.1.2.3) Lus10039987 [exp] 520 / 0 AT5G32440 255 / 1e-84 Ubiquitin system component Cue protein (.1.2.3) Lus10039988 [exp] 504 / 0 AT5G32440 272 / 1e-91 Ubiquitin system component Cue protein (.1.2.3) Lus10025332 [exp] 140 / 6e-40 AT5G02510 152 / 4e-46 unknown protein Lus10024410 [exp] 139 / 3e-39 AT5G02510 149 / 8e-45 unknown protein Lus10014293 [exp] 127 / 6e-35 AT1G80040 129 / 1e-36 unknown protein Lus10026000 [exp] 122 / 4e-33 AT1G80040 121 / 1e-33 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G066000 [exp] 374 / 4e-131 AT5G32440 241 / 3e-79 Ubiquitin system component Cue protein (.1.2.3) Potri.018G127200 [exp] 372 / 2e-130 AT5G32440 287 / 1e-97 Ubiquitin system component Cue protein (.1.2.3) Potri.005G121100 [exp] 147 / 2e-43 AT1G80040 130 / 2e-37 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF02845 [flax] [poplar] CUE CUE domain
Representative CDS sequence Show only first row Show all	>Lus10027699 pacid=23151292 polypeptide=Lus10027699 locus=Lus10027699.g ID=Lus10027699.BGIv1.0 annot-version=v1.0 ATGTCTGCCGTCGTGGGCGGAAAGAGATCTTTCTTCGAAGATTTGAACATCACAAGCACGCCGGTTACCAAAAGAATCCGTTGTTCTTCGTCTTCCCCTG TTCGTTTCTCCCCAACCAGAACCCAATCCTCTGCAGCCCTCCCTCCTGCTTCTTCTACTTCTTCTTCTTCTGCACATTTTATCGAACAGCTCGCTGCTAC TTTCCCTGAAATGGACAAGGAGCTCCTTGAAAGAGCACTTGCAGAATGTGGGGAGGATTTGGAGTTGGCCATAAGAAGCTTCAATGAACTTCGGTTAGGG TCTGCCGATAAGAATTTAGGTTCTCAGGCTGGCAAATGTGACGGACTCGTTGATGCTGATGGAAATGTTCAAGGCACTGCACCAACTGATCCTGAGTTCC CAGCGGCTGAGAATCCTTCAGTTTCATCTCATCTTCAAATGGACGGTGCAGAGTGGGTGGAGCTATTCGTTAGAGAAATGACTAGCGCTACCAACATGGA TGATGCGAAAGCACGTGCTTCAAGAGCCCTAGAAGCTCTAGAGAAGTCCATGTATGCTCGTGCAGGAGCAGAAGCAGTGAAGAACTTTAAAATGGAAAAT GTGAAGTTGAAGGAGCAAGTCCAATTGCTCATACATGAGAACACAATCCTCAAGCGAGCCGTATCAATCCAACATGAGCGACAGAAGGAGTTTGAAGACA GAAACCAGGAACTTGAGCAGTTGAAGCAGCTAGTGGCGCAATACCAGGACCAATTGAGAACCTTGGAGGTAGGAACTGCTAATTCCATAATCATTTTCAA TGATGTTAGTAGAGCCGTCGATGATGTAAACAACTACGCATTGTCAATGCACCTGAAGCAGGCACAGCAAAGCAGCTCAATTCCAGGGCGTTTCCATCCT GATGTGTTCTAA
AA sequence Show only first row Show all	>Lus10027699 pacid=23151292 polypeptide=Lus10027699 locus=Lus10027699.g ID=Lus10027699.BGIv1.0 annot-version=v1.0 MSAVVGGKRSFFEDLNITSTPVTKRIRCSSSSPVRFSPTRTQSSAALPPASSTSSSSAHFIEQLAATFPEMDKELLERALAECGEDLELAIRSFNELRLG SADKNLGSQAGKCDGLVDADGNVQGTAPTDPEFPAAENPSVSSHLQMDGAEWVELFVREMTSATNMDDAKARASRALEALEKSMYARAGAEAVKNFKMEN VKLKEQVQLLIHENTILKRAVSIQHERQKEFEDRNQELEQLKQLVAQYQDQLRTLEVGTANSIIIFNDVSRAVDDVNNYALSMHLKQAQQSSSIPGRFHP DVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G32440			Ubiquitin system component Cue...		Lus10027699 [exp]	0	1
AT5G47760		ATPK5, ATPGLP2	2-phosphoglycolate phosphatase...		Lus10033024 [exp]	4.2	0.7367
AT2G39960			Microsomal signal peptidase 25...		Lus10009885 [exp]	4.9	0.7131
AT5G52980			unknown protein		Lus10000151 [exp]	8.7	0.7126
AT2G05250			DNAJ heat shock N-terminal dom...		Lus10001171 [exp]	9.8	0.7349
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10003112 [exp]	11.2	0.6988
AT3G60910			S-adenosyl-L-methionine-depend...		Lus10019750 [exp]	12.0	0.6651
AT2G32900		ATZW10	centromere/kinetochore protein...		Lus10029956 [exp]	15.3	0.7017
AT5G52880			F-box family protein (.1)		Lus10027547 [exp]	20.0	0.7115
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Lus10037347 [exp]	25.5	0.5785
AT3G44716			unknown protein		Lus10009406 [exp]	27.7	0.6703

Compare expression of checked genes

Lus10027699 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.