Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43290 149 / 1e-44 MSS3 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) AT3G07490 145 / 5e-44 AtCML3, AGD11 calmodulin-like 3, ARF-GAP domain 11 (.1) AT1G05990 142 / 4e-43 RHS1 ,RHS2 ROOT HAIR SPECIFIC 1, EF hand calcium-binding protein family (.1) AT4G03290 139 / 7e-42 EF hand calcium-binding protein family (.1) AT4G12860 138 / 2e-41 UNE14 unfertilized embryo sac 14, EF hand calcium-binding protein family (.1) AT3G59440 139 / 6e-41 Calcium-binding EF-hand family protein (.1) AT5G37770 110 / 3e-30 CML24, TCH2 TOUCH 2, CALMODULIN-LIKE 24, EF hand calcium-binding protein family (.1) AT1G66400 104 / 5e-28 CML23 calmodulin like 23 (.1) AT1G18210 103 / 1e-27 Calcium-binding EF-hand family protein (.1.2) AT4G20780 99 / 9e-26 CML42 calmodulin like 42 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039986 [exp] 315 / 5e-110 AT3G07490 132 / 3e-39 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10006644 [exp] 260 / 5e-88 AT3G07490 148 / 3e-45 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10038088 [exp] 255 / 3e-86 AT3G07490 150 / 7e-46 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10009564 [exp] 140 / 5e-42 AT3G07490 233 / 7e-80 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10009127 [exp] 109 / 1e-28 AT1G66400 147 / 2e-44 calmodulin like 23 (.1) Lus10018012 [exp] 105 / 3e-28 AT1G18210 195 / 2e-64 Calcium-binding EF-hand family protein (.1.2) Lus10009059 [exp] 97 / 5e-25 AT1G18210 197 / 3e-65 Calcium-binding EF-hand family protein (.1.2) Lus10041288 [exp] 96 / 5e-25 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10037423 [exp] 96 / 5e-25 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G127100 [exp] 223 / 2e-73 AT3G07490 132 / 6e-39 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.006G065900 [exp] 222 / 3e-73 AT3G07490 131 / 1e-38 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.002G239100 [exp] 149 / 8e-46 AT3G07490 248 / 8e-86 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.017G029700 [exp] 146 / 2e-43 AT3G07490 192 / 1e-62 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.007G128600 [exp] 144 / 6e-43 AT2G43290 218 / 3e-72 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Potri.004G089400 [exp] 110 / 1e-30 AT1G66400 157 / 7e-50 calmodulin like 23 (.1) Potri.012G048200 [exp] 106 / 8e-29 AT1G18210 188 / 8e-62 Calcium-binding EF-hand family protein (.1.2) Potri.010G107100 [exp] 103 / 3e-27 AT1G24620 220 / 2e-73 EF hand calcium-binding protein family (.1) Potri.017G126200 [exp] 102 / 3e-27 AT1G66400 155 / 5e-49 calmodulin like 23 (.1) Potri.015G039500 [exp] 102 / 4e-27 AT1G18210 189 / 6e-62 Calcium-binding EF-hand family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10027701 pacid=23151229 polypeptide=Lus10027701 locus=Lus10027701.g ID=Lus10027701.BGIv1.0 annot-version=v1.0 ATGATCACCGCCGCACTACTACTGTTGCTCCTCTTCATCGCCGGAGTTTTCAACCTCAGTTCCTACTTTCCTTCCAAGAAGCTCTACGCCCGTCTCCACT CCCTCTTCCTCGCCGCCACCATGAAGGCGGAGACGGAGGAAATCAAATCCGCTCCAGTGAAGCAGGTAATAAAAAATTCGGCAGCGGAGGACGAGATGAC GAGCGTGTTCGCAACGTTCGACAAGAACGGGGACGGATTCATCACGAAGCAGGAGCTAAAGGAATCGCTGAAGAACATCCGGATCTCCGTCACGGAGAAG GAAGCCGAGGAGATGGTGGTGAAGGTGGATTCGAATGGCGACGGGCTCATTGACTTGGAGGAGTTCAAGATCCTGTACCGGAATATGACCGCCGCAGGAT CGGGTGGTGGAGATCAAGAAGCAAGAGATCCGGCAGTGGAAGACAACGGAAACGTGTTGAAGGAAGCTTTTGAGGTTTTTGATAGGGATAACGATGGATT GATCACGGTGGAGGAGCTTGGATCGGTGTTGTCATCGTTAGGGATGAAGGAAGGGAAGAGGATGGAGGACTGCAAGGAGATGATAAGGAGAGTTGATGTG GACGGCGACGGGATGGTGAATTTTGATGAATTCAAGACGATGATGAGGAACGGTGGTGGTAATAAGCTTCTTCTTCCGGGTCTCTGTTGA
AA sequence Show only first row Show all	>Lus10027701 pacid=23151229 polypeptide=Lus10027701 locus=Lus10027701.g ID=Lus10027701.BGIv1.0 annot-version=v1.0 MITAALLLLLLFIAGVFNLSSYFPSKKLYARLHSLFLAATMKAETEEIKSAPVKQVIKNSAAEDEMTSVFATFDKNGDGFITKQELKESLKNIRISVTEK EAEEMVVKVDSNGDGLIDLEEFKILYRNMTAAGSGGGDQEARDPAVEDNGNVLKEAFEVFDRDNDGLITVEELGSVLSSLGMKEGKRMEDCKEMIRRVDV DGDGMVNFDEFKTMMRNGGGNKLLLPGLC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43290		MSS3	multicopy suppressors of snf4 ...		Lus10027701 [exp]	0	1
AT5G51570			SPFH/Band 7/PHB domain-contain...		Lus10015032 [exp]	1.0	0.9431
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Lus10020389 [exp]	1.4	0.9164
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Lus10020913 [exp]	2.2	0.9022
AT1G66400		CML23	calmodulin like 23 (.1)		Lus10028516 [exp]	2.4	0.9142
AT2G46550			unknown protein		Lus10023163 [exp]	2.6	0.8960
AT5G56150		UBC30	ubiquitin-conjugating enzyme 3...		Lus10016670 [exp]	2.8	0.9031
AT5G07250		ATRBL3	RHOMBOID-like protein 3 (.1.2)		Lus10027436 [exp]	3.5	0.9021
AT1G66400		CML23	calmodulin like 23 (.1)		Lus10009127 [exp]	4.9	0.8798
AT1G55270			Galactose oxidase/kelch repeat...		Lus10019425 [exp]	5.8	0.8470
AT2G01990			unknown protein		Lus10013793 [exp]	10.0	0.8316

Compare expression of checked genes

Lus10027701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.