Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56150 1082 / 0 ATTIF3C1, ATEIF3C-1, TIF3C1, EIF3C eukaryotic translation initiation factor 3C (.1.2) AT3G22860 845 / 0 ATTIF3C2, ATEIF3C-2, TIF3C2 EUKARYOTIC INITIATION FACTOR 3C-2, eukaryotic translation initiation factor 3 subunit C2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039984 [exp] 1495 / 0 AT3G56150 1176 / 0.0 eukaryotic translation initiation factor 3C (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G245100 [exp] 1175 / 0 AT3G56150 1079 / 0.0 eukaryotic translation initiation factor 3C (.1.2) Potri.002G016900 [exp] 1163 / 0 AT3G56150 1095 / 0.0 eukaryotic translation initiation factor 3C (.1.2) Potri.016G063500 [exp] 1150 / 0 AT3G56150 1017 / 0.0 eukaryotic translation initiation factor 3C (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05470 [flax] [poplar] eIF-3c_N Eukaryotic translation initiation factor 3 subunit 8 N-terminus CL0123 [flax] [poplar] HTH PF01399 [flax] [poplar] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Lus10027702 pacid=23151299 polypeptide=Lus10027702 locus=Lus10027702.g ID=Lus10027702.BGIv1.0 annot-version=v1.0 ATGGCAACAAGGCGTTCGAAGTTCTTTGGGGGTGGAAGTGATTCCGAAGAGGCTTCAGACCCGAGTGATTTTGAAGATGAGATTGAAGAGGGAATCGTTG GAGGTGATCGCGCTGCGGTCGATGCACAGAATCCGTATCTTAGGACTACCAACACTGACAGTGATGATTCTGATGGGGAGAAGCGCGTCGTTAGGTCGGC AAAAGACAAGCGTTTTGAGGAGATGTCCTCCACTCTTGAGCAGATCAAGAACGCTATGAAGATTAATGATTGGGTCAGCCTGCAGGAAAGCTTTGACAAG ATAAACAAGCAGCTCGAGAAAGTCATGCGTGTAACTGAGTCTGAGAAGGTACCAAACCTTTACCTGAAGGCCTTGGTAATGCTGGAGGATTTTTTGAACC AGGCTTTGGCAAACAAGGAGGCCAAAAAGAAGATGAGCAGTAGTAATGCCAAGGCTTTGAACTCCATGAAGCAGAAGCTTAAGAAGAACAACAAACAGTA CGAAGAACTTATTGTGAAGTACAGGGAAAAACCTGAGAGTGAAGCGGAGCTTGAAGAGGAATTGGTAGATACTACTACTGATGATGAAGAGTCTGTAATG TCTAATGACGGGACTCCTGTAATATCTGACGAGTCTACTGATGAGGAGACCCCGGTTGAAGGTGAGGGCAGATGGGAGAAGATGTTGAGTAAGAAGGAGA AACTCATGGATAAGCAGTTCATGAAGGATCCCAGCGAAATTACCTGGGACGTTGTGAATAAAAAATTTAAAGAAGTTGTTGCAGCCCGTGGTAGGAAGGG CACTGGGAGGTTTGAACAGGTTGAGCAGCTAACTTTTTTGACAAAGGTTGCGAAGACACCAGCACAAAAGCTCGAAATTCTGTTTAGTGTTGTGTCTGCT CAGTTTGACGTGAAACCAGGGCTTAATGGCCACATGCCTATAAATGTTTGGAAGAAGTGTGTGCTGAATATGCTGGTTATCCTTGACATTCTCTTCCAGC ATCGTAATATCATAGTAGATGAAACGATCGAGCAAGATGAGACCGAGTCTCAGAAGGGAGCGGACCATGAATCTCCCATCCGCATGTGGGGAAACTTGCT GGGCTCCCTTGAGCGAATTGATATTGAGTTCTTCAAGAGCCTGCAATGCATTGATCCACATACTCGGGAGTATGTTGATAGACTGCAAGATGAACCATTG TTTTTGGTTCTTGCTCAAAATGTTCAGGAGTACTTTGAGCGGGCTGGAGACTATAAAGCTGCCTCTAAGGTTGCTTTGAGGCGTGTCGAGCTCGTGTATT ACAAGCCGCAAGCTGTTTATGATGCTATGAGAAATCTGGCTGAACAAACAGCAGATGGAGACAATGGTGAAGATAAGGCTGATGACAGTAGAGGTCCATC TCCATTTGTCGCTGTTTCTGAGGTTGTGCCTCGGAAGCCCACTTTCCCAGAGAACAGCAGATCGATGATGGACATGTTGGTCTCTCTGATTTACAAATAT GGAGATGACCGCACCAAAGCGCGTGCTATGCTTTGTGATATCTACCACCATGCTCTCCTGGATGAGTTCTCTATTGCTCGTGACTTGCTGTTGATGAGTC ACTTGCAGGATAACATTCAGCATTTGGACATTATGACCCAGATCCTTTTTAACAGGGCCATGGCTCAGCTTGGTTTGTGTGCATTTAGGGCTGGGCTAAT CACTGAAGGACATGGTTGTCTCTCTGAACTGTATTCTGGTGGAAGGGTAAAAGAGTTGCTTGCCCAAGGTGTATCCCAAAGTCGATATTATGAGAAGACC CCAGAGCAGGAAAGGCTGGAAAGGAGGCGTCAGATGCCATACCATATGCACATAAATCTCGAGCTTCTGGAAGCTGTACATCTCATCTGTGCAATGCTCC TTGAAGTTCCAAACATGGCAGCCAACAGCCACGATGTAAAGCGCAGAGTCATAAGCAAGAATTTCAGGCGTTTGCTTGAGATCAGTGAGAGGCAAACTTT CACTGGTCCTCCTGAAAACGTAAGAGACCATGTCATGGCTGCAACCAGAGCTCTTACAAAGGGAGACTTCCTCAAAGCCTTTGAAGTAATCCAATCCCTC GATATCTGGAGACTTCTGCGAAACAAAGAGAGTGTTCTAGAGATGCTCAAGTCCAAGATTAAGGAAGCAGCTCTCAGGACCTATCTGTTGACCTATTCTG TGTCGTACAGCTCTCTGAGCTTGGAACAGCTGATGTCAATGTTTGACTTGTCAAGAGCTCAAGCTCACAGCAATGTGAGCAAGATGATGATCAATGAGGA GCTGTATGCTAGCTGGGACCAGCCGACAGGGTGCATAGTCTTCCATGACGTTGAGTATTCGAGGCTTCAGACTTTGGCGTTTCAGCTAACAGAGAAGCTT TCGATCCTGGCCGACAGCAATGAAAGGGCAATGGAAACTGGCATTGGAGGCACTGGGATGGAACTGCCTACAAGGAGGAGAGATGGTGGTGGGCAGGACT ATGCCAACGTTGCTGCTGGTAAGTGGCAGGACAATAATTCCTACTACAACAACAATCAACAGGGACGAGGACGTTCGGGGAGATCTGGACAGGGTTCGAG AGGCGGGTATGGTAGGGGTAGCCAGGTAAGAGGAGCGGGCGGGGCTCGTAATCAAGAATCATCAGCTTATTATGGAGGTGGATCGAGAAGATCTGGCAGC TCAGCAGTCAGGGGTTCTCAGATGGATGGTTCTACCCGTATGGTCAATCTGAATCGTGGTGTTCACGCATAA
AA sequence Show only first row Show all	>Lus10027702 pacid=23151299 polypeptide=Lus10027702 locus=Lus10027702.g ID=Lus10027702.BGIv1.0 annot-version=v1.0 MATRRSKFFGGGSDSEEASDPSDFEDEIEEGIVGGDRAAVDAQNPYLRTTNTDSDDSDGEKRVVRSAKDKRFEEMSSTLEQIKNAMKINDWVSLQESFDK INKQLEKVMRVTESEKVPNLYLKALVMLEDFLNQALANKEAKKKMSSSNAKALNSMKQKLKKNNKQYEELIVKYREKPESEAELEEELVDTTTDDEESVM SNDGTPVISDESTDEETPVEGEGRWEKMLSKKEKLMDKQFMKDPSEITWDVVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSA QFDVKPGLNGHMPINVWKKCVLNMLVILDILFQHRNIIVDETIEQDETESQKGADHESPIRMWGNLLGSLERIDIEFFKSLQCIDPHTREYVDRLQDEPL FLVLAQNVQEYFERAGDYKAASKVALRRVELVYYKPQAVYDAMRNLAEQTADGDNGEDKADDSRGPSPFVAVSEVVPRKPTFPENSRSMMDMLVSLIYKY GDDRTKARAMLCDIYHHALLDEFSIARDLLLMSHLQDNIQHLDIMTQILFNRAMAQLGLCAFRAGLITEGHGCLSELYSGGRVKELLAQGVSQSRYYEKT PEQERLERRRQMPYHMHINLELLEAVHLICAMLLEVPNMAANSHDVKRRVISKNFRRLLEISERQTFTGPPENVRDHVMAATRALTKGDFLKAFEVIQSL DIWRLLRNKESVLEMLKSKIKEAALRTYLLTYSVSYSSLSLEQLMSMFDLSRAQAHSNVSKMMINEELYASWDQPTGCIVFHDVEYSRLQTLAFQLTEKL SILADSNERAMETGIGGTGMELPTRRRDGGGQDYANVAAGKWQDNNSYYNNNQQGRGRSGRSGQGSRGGYGRGSQVRGAGGARNQESSAYYGGGSRRSGS SAVRGSQMDGSTRMVNLNRGVHA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56150		ATTIF3C1, ATEIF...	eukaryotic translation initiat...		Lus10027702 [exp]	0	1
AT1G61580		RPL3B, ARP2	ARABIDOPSIS RIBOSOMAL PROTEIN ...		Lus10035786 [exp]	1.4	0.9751
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10034682 [exp]	1.7	0.9639
AT1G61580		RPL3B, ARP2	ARABIDOPSIS RIBOSOMAL PROTEIN ...		Lus10037360 [exp]	2.0	0.9751
AT3G02760			Class II aaRS and biotin synth...		Lus10041073 [exp]	3.5	0.9573
AT1G18080		RACK1A_AT, ATAR...	RECEPTOR FOR ACTIVATED C KINAS...		Lus10003080 [exp]	3.9	0.9554
AT3G03060			P-loop containing nucleoside t...		Lus10031787 [exp]	4.6	0.9543
AT5G49020		ATPRMT4A	ARABIDOPSIS THALIANA PROTEIN A...		Lus10043412 [exp]	5.3	0.9493
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10041999 [exp]	7.3	0.9553
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031763 [exp]	8.4	0.9520
AT1G14610		VALRS, TWN2	VALYL TRNA SYNTHETASE, TWIN 2,...		Lus10034788 [exp]	8.5	0.9458

Compare expression of checked genes

Lus10027702 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.