Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35430 657 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039983 [exp] 1487 / 0 AT5G35430 736 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G065600 [exp] 1053 / 0 AT5G35430 635 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G126100 [exp] 1052 / 0 AT5G35430 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G126780 [exp] 88 / 1e-17 AT3G42170 796 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.004G126740 [exp] 85 / 1e-16 AT3G42170 803 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027703 pacid=23151193 polypeptide=Lus10027703 locus=Lus10027703.g ID=Lus10027703.BGIv1.0 annot-version=v1.0 ATGGACTCGCGAGATTCTGCATCTCAACCTTCAGCAGCTTCCGCGCCGGCGAACAGCCGTGTTGAGCCTTCCATGTCATCCAACGGCGGGGAGGACGACG CTTTTCTCTTCGCCACTGCTGCTCTCGCTAAGGACGCTGCAATGCACTTCCAGTCCCGGAGATTCTCTGACTGTCTCGATGTTTTGAATCAGCTCAAGCA GAAGAAAGAACACGATCCAAGAGTTCTTCATAATATTGCAATAGCAGAATATTTCCGAGATGGTTGTTCGGATACAAAGAAGTTGCTTGATGGACTAAAC TCTGTGAAGAGGAAAAGTCAGGTCCTTGCTCATGCTTCAGGGGAACCTCTAGAAGCTGCTAACAGTCTTGGGAGCAAAGTTCTACCTGGTGCGAGAGGAA GTGTTACGACGACGCACCAGTTATCTACTGGAAATACTGGAGCTCTTGTTTACATGGATGAATTTGACCCAGCCGTGGCCACGCTAAACATTGCAATCAT TTGGTTCCACCTTCATGAATATACGAAGGCCTTGTCAGTTTTAGAACCTCTTTATCAAAATATCGCTCCGATTGATGAGACAATAGCCCTTCATGTTTGC TTGTTATCACTGGACGTCGCACTTGCTTGTCAAGATGCATCCAAATCTGCTGATGTCCTACTCTATCTAGAAAAATCGTTTGGTATCAATTCTGTGAGTC AAGGAGATAATGGAAGTGTTGCACAGCAACAGTCAACGAACTTAATTGCAAAATCGTCTTCTATTCCAAACAGTTCATTAGTTGTTGATGCACATAGCTC AGATTTAGCAGTTAGTGGGAATGCTTTAGAAAGTTCATTATCTAGGTCGCTGTCGTTGTCAGAGGATTCATTGGAGTATGAAAGCATGTTTTCTCTCGAC GTAACTGGACAGAGTTTGAGTAAGCCGCCAGGATTTTCATCTTCAACTGATCTTTCAAGGACCTCCGGGGATAGGTCAACGTCAACCCTTGATTTGAAGC TTAAGTTGCAATTATACAAGGTTCAATTTCTTCTTCTGACCAGGAACTTGAAACATGCTAAACGTGAAGTGAAGCTTGCTATGAACGTTGGACGAGGGAG GGATTCATCAATGGCTTTGCTCTTGAAGTCTCAGCTTGAATATGCTCGTGGTAACCATCGGAAGGCTATCAAGCTATTGATGGCATCAAGTAACCGTACA GATATGGGGATTTCTAACATGTTGAACAACCTGGGCTGTATTTACTATCAGCTTGGGAATTACCATACATCATCAGTCCTCTTCTCAAAGGCACTGAGCA GTTGTTCATCTCTTCGGAAGGATAAGCCTCTGAAGCTGTCATCTCTGTCGCAGGATAAGTCTCTCCTCATATTGTATAATTGTGGCGTTCAGCACTTGGC ATGCGGGAAGCCTTTGGTGGCTGCTCGTTGTTTTCAGAAGGCAAGTTTGTTATTTTATAACCGGCCTATTCTGTGGCTGCGCCTTGCAGAATGCTGCATT ATGGCTTTACAGAAAGGTCTTATCAAAGGCGGTCGGGCTTCTTCAAGGAAATCGGAAATCATGGTGCATGTTGTTGGCAAGGGTAAATGGAGGTATCTTG CTGTGGAAGATGGGATTGCAAGAAATGGTTATGTGAATTCTGCTGAAAACGATGTTCCATCTCTGGGCGATGGTCAACCTGCGCTCTCCATGTCCTTTGC TAGGCAGTGCTTACTGAATGCATTGCATTTATTGGACTACTCCGAACTAAACCATCTCAAGTATGGATTACCGTCCTCTTTCTCTATGGAGGAAAGTGAA TCAAGTGATGCAGTTAAAAACTCGAATCATAAGAACTTGACGAGTTTCGATACCAAAGGCTCAGCAGGAGGCTTGGTTCAGATGAATGCAAATGGTGATG CGAGGGAACAGAAAGGAGGAGGAACTAGTCAGGAGATTATGCAGAATTCAATATGTTACTATGAAGATGTTCATCGACGAGAAAACCAGATGATTAAGCA AGCTCTTCTAGCAAACTTGGCATATGTTGAGCTGGCACTGGGGAATCCTGATAAGGCATTGTCAAGTGCAATGTCTCTTTTTGAACTACCAGAGTGTTCG AGAATTTTCGTCTTTCTTGGACACTTATATGCAGCAGAGGCACTCTGCTTACTAGACAAGCCAAAAGAAGCAGCGGAGCATGTGTCTATTTATCTGTCTG GAGGGGACAACGTGGAGTTACCGTTCAAGCTAGAGGATTTTGAGCAGTTGCAAGTAGAGAAAACATTGGATAATGATGACTCAAGTGGACAGAATAAGTC GGAATACCAGAGCGTTGCATTCCTGAAGCCAAATGAGGCACGCGGAACCCTTTATGCGAATTTTGCAGCCTTGTGCGCAATGCAAGGTGAGGTAGAGCGA GCGCAGCATTTCGTGACGCAAGCGTTGTCCCTCATCCCGAGCAGCAGAGAAGCAACATTGACAGCAGTGTACTTGGACCTATTACTAGGTAAGTCGGAGT CGGCGGTTACGAGGTTAAGGCAATGCAACCAGGTACGGTTCGTTTCAGGGAGTGTACAATTGAGTAAATCTTGA
AA sequence Show only first row Show all	>Lus10027703 pacid=23151193 polypeptide=Lus10027703 locus=Lus10027703.g ID=Lus10027703.BGIv1.0 annot-version=v1.0 MDSRDSASQPSAASAPANSRVEPSMSSNGGEDDAFLFATAALAKDAAMHFQSRRFSDCLDVLNQLKQKKEHDPRVLHNIAIAEYFRDGCSDTKKLLDGLN SVKRKSQVLAHASGEPLEAANSLGSKVLPGARGSVTTTHQLSTGNTGALVYMDEFDPAVATLNIAIIWFHLHEYTKALSVLEPLYQNIAPIDETIALHVC LLSLDVALACQDASKSADVLLYLEKSFGINSVSQGDNGSVAQQQSTNLIAKSSSIPNSSLVVDAHSSDLAVSGNALESSLSRSLSLSEDSLEYESMFSLD VTGQSLSKPPGFSSSTDLSRTSGDRSTSTLDLKLKLQLYKVQFLLLTRNLKHAKREVKLAMNVGRGRDSSMALLLKSQLEYARGNHRKAIKLLMASSNRT DMGISNMLNNLGCIYYQLGNYHTSSVLFSKALSSCSSLRKDKPLKLSSLSQDKSLLILYNCGVQHLACGKPLVAARCFQKASLLFYNRPILWLRLAECCI MALQKGLIKGGRASSRKSEIMVHVVGKGKWRYLAVEDGIARNGYVNSAENDVPSLGDGQPALSMSFARQCLLNALHLLDYSELNHLKYGLPSSFSMEESE SSDAVKNSNHKNLTSFDTKGSAGGLVQMNANGDAREQKGGGTSQEIMQNSICYYEDVHRRENQMIKQALLANLAYVELALGNPDKALSSAMSLFELPECS RIFVFLGHLYAAEALCLLDKPKEAAEHVSIYLSGGDNVELPFKLEDFEQLQVEKTLDNDDSSGQNKSEYQSVAFLKPNEARGTLYANFAALCAMQGEVER AQHFVTQALSLIPSSREATLTAVYLDLLLGKSESAVTRLRQCNQVRFVSGSVQLSKS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35430			Tetratricopeptide repeat (TPR)...		Lus10027703 [exp]	0	1
AT5G20730	ARF	MSG1, IAA21, BI...	MASSUGU 1, indole-3-acetic aci...		Lus10033635 [exp]	2.0	0.8819
AT1G76950		PRAF1	Regulator of chromosome conden...		Lus10028600 [exp]	7.3	0.8765
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Lus10011474 [exp]	10.7	0.8833
AT1G55930			CBS domain-containing protein ...		Lus10004777 [exp]	17.4	0.8719
AT3G58560			DNAse I-like superfamily prote...		Lus10029338 [exp]	18.8	0.8565
AT1G79150			binding (.1)		Lus10034234 [exp]	19.4	0.8738
AT1G73460			Protein kinase superfamily pro...		Lus10026360 [exp]	19.6	0.8610
AT5G06680		ATSPC98, SPC98,...	ARABIDOPSIS THALIANA GAMMA TUB...		Lus10029296 [exp]	20.4	0.8677
AT2G17510		EMB2763	EMBRYO DEFECTIVE 2763, ribonuc...		Lus10029500 [exp]	24.4	0.8737
AT3G11830			TCP-1/cpn60 chaperonin family ...		Lus10008406 [exp]	25.4	0.8760

Compare expression of checked genes

Lus10027703 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.