Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G10950 140 / 6e-39 BSD domain-containing protein (.1) AT1G10720 82 / 2e-17 BSD domain-containing protein (.1) AT3G49800 74 / 1e-14 BSD domain-containing protein (.1) AT5G65910 71 / 2e-13 BSD domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039982 [exp] 447 / 3e-158 AT2G10950 156 / 2e-44 BSD domain-containing protein (.1) Lus10011556 [exp] 105 / 2e-25 AT3G49800 372 / 3e-126 BSD domain-containing protein (.1) Lus10019271 [exp] 101 / 5e-24 AT3G49800 370 / 3e-125 BSD domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G125400 [exp] 192 / 2e-58 AT2G10950 143 / 2e-39 BSD domain-containing protein (.1) Potri.T125207 [exp] 192 / 2e-58 AT2G10950 143 / 2e-39 BSD domain-containing protein (.1) Potri.006G065200 [exp] 168 / 3e-49 AT2G10950 193 / 1e-58 BSD domain-containing protein (.1) Potri.014G008400 [exp] 108 / 2e-26 AT3G49800 332 / 1e-109 BSD domain-containing protein (.1) Potri.007G006400 [exp] 107 / 5e-26 AT3G49800 288 / 1e-93 BSD domain-containing protein (.1) Potri.014G014200 [exp] 89 / 2e-19 AT1G10720 223 / 6e-68 BSD domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03909 [flax] [poplar] BSD BSD domain
Representative CDS sequence Show only first row Show all	>Lus10027706 pacid=23151288 polypeptide=Lus10027706 locus=Lus10027706.g ID=Lus10027706.BGIv1.0 annot-version=v1.0 ATGGATTCTTCTGCTCTGCAGACTCCGCAGGGTTTGGCCGGGGTGCTCAATGATCTGGCTGAAATTGGAGGCAGCTTGAAGGCGGGATTGTCTCTCCTTT CTAGGATTAGAGAAGTCAGCCGAATTTCCAGAATTTTCGATGATAAACGGAAAACAGAGAAAGAGGAAGAAGCAGATGATGATTATGATGAAGATGAAGA TGATTATGTGGCTGGGATAAATGATGAATTTATTAAGTTCGCTAATCAGATCTCTGAAAGGTCCGCTTGCTGGACCGATTTCCCGTTGTCGCTCGAGGAT GACTTCAATTTCTCGGATGCTCAGAGACAACATGCTGCAAGTATTGAATATATGGTTCCAAGCCTGCGAGCACTACGAGTTAGCCTCCAAGGTTACATGA CGTCTGAGCAATTCTGGATGGTGTATTTTATTCTGCTACTTCCAAGACTTGATGAGTATGATATGGAGATTCTGTCTTCTTCCCAGATAGTCAACACCCG AAATAGGCTCATGCAGAAACTTCAAAACAACGAGAAAGCTGAAACCTCTGGAGAAGGACTGTCCAACTCCATCAACGCATCTCAGGAGATCAGTGCCGAA GAAGACGGACAGAATCCGGAACCAAGGTTAAAGCCGGAAGATGCTGGTGCTAGTTCCTCCATGAATAGCAAGAAGGTTGAAGATGAATCTGGTGTCCTGT GCAGTGATGATGATAGTATATTTTCAGCGAGACACTCGACCTCCAGTCATGCTCGTGGACTAAGAGAACCTTCGCCTGGAGGATCGTCGACTGAATGGGT CCAGCTAAATCGGGGCTATGAATCTCGAGGTGGTGGGTCTTCCCAGAGGTCATGGCAGTCGATTCATCGTGGAAAAGATTCAGATGCAGATTCCACGGCC AGTGAATGGCTTAGAGTCTACGAGTCTGATTGA
AA sequence Show only first row Show all	>Lus10027706 pacid=23151288 polypeptide=Lus10027706 locus=Lus10027706.g ID=Lus10027706.BGIv1.0 annot-version=v1.0 MDSSALQTPQGLAGVLNDLAEIGGSLKAGLSLLSRIREVSRISRIFDDKRKTEKEEEADDDYDEDEDDYVAGINDEFIKFANQISERSACWTDFPLSLED DFNFSDAQRQHAASIEYMVPSLRALRVSLQGYMTSEQFWMVYFILLLPRLDEYDMEILSSSQIVNTRNRLMQKLQNNEKAETSGEGLSNSINASQEISAE EDGQNPEPRLKPEDAGASSSMNSKKVEDESGVLCSDDDSIFSARHSTSSHARGLREPSPGGSSTEWVQLNRGYESRGGGSSQRSWQSIHRGKDSDADSTA SEWLRVYESD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G10950			BSD domain-containing protein ...		Lus10027706 [exp]	0	1
AT2G24550			unknown protein		Lus10026939 [exp]	1.4	0.9654
AT1G48300			unknown protein		Lus10038034 [exp]	2.0	0.9606
AT3G03610			ELMO/CED-12 family protein (.1...		Lus10009523 [exp]	2.4	0.9563
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10018702 [exp]	3.2	0.9642
AT2G37150			RING/U-box superfamily protein...		Lus10023507 [exp]	5.2	0.9611
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10018843 [exp]	7.2	0.9466
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10013019 [exp]	7.7	0.9573
AT5G66930			unknown protein		Lus10019643 [exp]	10.5	0.9491
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10000076 [exp]	10.6	0.9441
AT3G51730			saposin B domain-containing pr...		Lus10025248 [exp]	10.9	0.9563

Compare expression of checked genes

Lus10027706 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.