Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20260 503 / 6e-177 Exostosin family protein (.1) AT3G42180 477 / 2e-166 Exostosin family protein (.1.3) AT5G11130 470 / 2e-163 Exostosin family protein (.1) AT5G33290 437 / 4e-150 XGD1 xylogalacturonan deficient 1 (.1) AT5G03795 409 / 5e-139 Exostosin family protein (.1) AT5G25310 385 / 2e-130 Exostosin family protein (.1) AT3G07620 378 / 2e-127 Exostosin family protein (.1) AT4G16745 293 / 1e-93 Exostosin family protein (.1.2) AT5G19670 288 / 6e-91 Exostosin family protein (.1) AT5G25820 279 / 5e-87 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005186 [exp] 491 / 2e-171 AT5G20260 513 / 3e-180 Exostosin family protein (.1) Lus10039980 [exp] 466 / 3e-160 AT5G20260 489 / 2e-169 Exostosin family protein (.1) Lus10039142 [exp] 420 / 9e-143 AT5G03795 603 / 0.0 Exostosin family protein (.1) Lus10013790 [exp] 412 / 2e-139 AT5G03795 602 / 0.0 Exostosin family protein (.1) Lus10025178 [exp] 394 / 2e-133 AT5G03795 471 / 5e-163 Exostosin family protein (.1) Lus10008751 [exp] 394 / 1e-132 AT3G07620 542 / 0.0 Exostosin family protein (.1) Lus10001917 [exp] 390 / 3e-131 AT5G25310 499 / 3e-174 Exostosin family protein (.1) Lus10039981 [exp] 378 / 2e-130 AT5G20260 265 / 2e-86 Exostosin family protein (.1) Lus10016058 [exp] 355 / 2e-120 AT5G03795 439 / 1e-152 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G064600 [exp] 550 / 0 AT5G20260 543 / 0.0 Exostosin family protein (.1) Potri.T124507 [exp] 530 / 0 AT3G42180 526 / 0.0 Exostosin family protein (.1.3) Potri.018G124832 [exp] 529 / 0 AT3G42180 524 / 0.0 Exostosin family protein (.1.3) Potri.T124607 [exp] 516 / 0 AT5G20260 545 / 0.0 Exostosin family protein (.1) Potri.018G124945 [exp] 515 / 0 AT5G20260 548 / 0.0 Exostosin family protein (.1) Potri.006G064700 [exp] 503 / 3e-176 AT5G20260 563 / 0.0 Exostosin family protein (.1) Potri.T124707 [exp] 493 / 5e-172 AT5G20260 526 / 0.0 Exostosin family protein (.1) Potri.018G125058 [exp] 493 / 5e-172 AT5G20260 526 / 0.0 Exostosin family protein (.1) Potri.018G025200 [exp] 491 / 5e-172 AT5G11130 530 / 0.0 Exostosin family protein (.1) Potri.006G064900 [exp] 482 / 3e-168 AT5G20260 530 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10027707 pacid=23151311 polypeptide=Lus10027707 locus=Lus10027707.g ID=Lus10027707.BGIv1.0 annot-version=v1.0 ATGCAATTGATGGGGAACCTCAGAAATTGTAGTAGCCATTGTTCATCTTCATACACACTACTCCCACTAATTTGCTCAACGCTTCTTCTTCTCCTTCTTC TCTACCATCAACCTACTACTTCTTCTTCTTCTTCTTCTTCTTCTTCTATCTCCTCCTTTTCTTCTTCCTCCAACCCAACTACCAACAACAACATTACCCA CCATTCACCACCCCCCAAGGAGGCGATCGAGAAGAAAAGTAATGGGCTGGAGAGGATTGAAGCACAATTGGGGACGGCGAGGAAAGCGATTAATGAAGCA ATTAGGACGAGGAATTACACGTCCGATGAGCAAGAGACTTTCATCCCCCGAGGCAATATTTACAGAAACGCTTACGCTTTTCACCAGAGCCATATCGAGA TGAGGAAGCGATTCAAGATATGGACGTACAAAGAAGGTGAAAAGCCTTTGGTTCATGTTGGGCCGATGAAGAACATCTACTCCATAGAGGGCCAGTTCAT AGACGAACTCGAGAGAGGAAACACCCCATTTGCAGCCCAAAACCCGGAGGAAGCCCACGTGTTTTTCTTACCCGTCAGCATTGCAAACATAGTCAAATTC GTTTACTCTTCAGGTTACGATCTACACTTCTTGTTAAATATCTTCAAAGACTATGTTCATGTCTCGTCGATAAAGTATCCTTACTGGAATCGGACATCGG GGGCCGACCATTTCATGCTCTCGTGCCACGATTGGGCGCCCGAGCTTCCCAAGTATGACTACGACACGTATAAGAACATCATAAGGGTTTTGTGCAATGC CAACATGTCGGAAGGGTTTCATCCCGTTCGAGATGTGTCGCTTCCTGAGCTCAAGACTCCTCCGGATAGGCTCACACCTTCAATCTTGAGGAACTCTCCC GAGAATCGCGACACATTGGCGTTTTTCGCAGGAGGGTCCCATGGTTACATTCGGGAGGTGTTGCTGGATCACTGGAAGGACAAAGACGACGAAGTGAGAG TCCATGAATATTTGAAGAAGGGAGAGAACTACATGAAGCTAATGAGCGAGAGCAAGTTCTGCCTGTGTCCAAGCGGGTACGAGGTTGCGAGTCCGAGATT GGTGGAGGCGATGTTTGCCGGATGTGTCCCAGTCTTGTTGTCGGCTAACTATAGTTTGCCGTTTAGCGAGGTGTTGGATTGGTCGAGATTCTCGGTTCAG ATTCCAGTTGAGAAAATTCCCGAGTTGAAGACGATCCTGAAGAATATTGGGGATGCCAAATACTTGAAGTTGCAGAGGAATGTGGTGAAGGTGAGAAGAC ATTTCGAGCTGAATCGTCCGTCGAAGCCGTTTGATGTGCTGCATATGGTGATTCACTCTATTTGGCTAAGAAGGCTTAACATTAGGCTACCTGCTCATTA A
AA sequence Show only first row Show all	>Lus10027707 pacid=23151311 polypeptide=Lus10027707 locus=Lus10027707.g ID=Lus10027707.BGIv1.0 annot-version=v1.0 MQLMGNLRNCSSHCSSSYTLLPLICSTLLLLLLLYHQPTTSSSSSSSSSISSFSSSSNPTTNNNITHHSPPPKEAIEKKSNGLERIEAQLGTARKAINEA IRTRNYTSDEQETFIPRGNIYRNAYAFHQSHIEMRKRFKIWTYKEGEKPLVHVGPMKNIYSIEGQFIDELERGNTPFAAQNPEEAHVFFLPVSIANIVKF VYSSGYDLHFLLNIFKDYVHVSSIKYPYWNRTSGADHFMLSCHDWAPELPKYDYDTYKNIIRVLCNANMSEGFHPVRDVSLPELKTPPDRLTPSILRNSP ENRDTLAFFAGGSHGYIREVLLDHWKDKDDEVRVHEYLKKGENYMKLMSESKFCLCPSGYEVASPRLVEAMFAGCVPVLLSANYSLPFSEVLDWSRFSVQ IPVEKIPELKTILKNIGDAKYLKLQRNVVKVRRHFELNRPSKPFDVLHMVIHSIWLRRLNIRLPAH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20260			Exostosin family protein (.1)		Lus10027707 [exp]	0	1
AT1G52540			Protein kinase superfamily pro...		Lus10001323 [exp]	4.0	0.7302
					Lus10032002 [exp]	6.3	0.7045
					Lus10020204 [exp]	8.5	0.6136
AT1G47710			Serine protease inhibitor (SER...		Lus10040926 [exp]	9.8	0.7011
					Lus10013951 [exp]	9.9	0.6543
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10003754 [exp]	26.5	0.6763
AT3G57990			unknown protein		Lus10000401 [exp]	27.7	0.6121
					Lus10001069 [exp]	32.2	0.6090
AT3G05550			Hypoxia-responsive family prot...		Lus10031490 [exp]	32.5	0.6019
AT1G06770		DRIP1	DREB2A-interacting protein 1 (...		Lus10042532 [exp]	33.4	0.6019

Compare expression of checked genes

Lus10027707 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.