Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05500 260 / 4e-83 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G11100 260 / 6e-83 SYT4, NTMCTYPE2.2, ATSYTD ,NTMC2T2.2 ,NTMC2TYPE2.2 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G61050 140 / 4e-38 AtCLB, NTMCTYPE4 ,NTMC2T4 ,NTMC2TYPE4 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT3G61030 108 / 2e-26 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G60950 108 / 2e-26 C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (.1) AT5G04220 103 / 1e-24 SYT3, NTMCTYPE1.3, ATSYTC ,NTMC2T1.3 ,NTMC2TYPE1.3 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT2G20990 98 / 1e-22 SYT1, NTMC2TYPE1.1, ATSYTA ,NTMC2T1.1 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) AT1G20080 97 / 3e-22 SYT2, NTMCTYPE1.2, ATSYTB ,NTMC2T1.2 ,NTMC2TYPE1.2 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G03370 41 / 0.001 C2 calcium/lipid-binding and GRAM domain containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039979 [exp] 493 / 3e-176 AT5G11100 379 / 2e-127 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10008055 [exp] 291 / 4e-95 AT1G05500 775 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10038117 [exp] 291 / 8e-95 AT1G05500 888 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10006193 [exp] 257 / 2e-81 AT5G11100 862 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10041034 [exp] 252 / 2e-80 AT5G11100 710 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10041396 [exp] 141 / 3e-38 AT3G61050 676 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10036532 [exp] 140 / 1e-37 AT3G61050 672 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10014127 [exp] 101 / 6e-24 AT2G20990 821 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Lus10013563 [exp] 97 / 2e-22 AT1G20080 852 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G063900 [exp] 269 / 3e-86 AT1G05500 847 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G124000 [exp] 265 / 8e-85 AT1G05500 877 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G025000 [exp] 246 / 1e-77 AT5G11100 824 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.014G072800 [exp] 144 / 2e-39 AT3G61050 657 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.002G150700 [exp] 142 / 1e-38 AT3G61050 624 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.008G038300 [exp] 107 / 5e-26 AT5G04220 629 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.002G019800 [exp] 101 / 7e-24 AT1G20080 846 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.004G174600 [exp] 100 / 3e-23 AT2G20990 854 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.009G134200 [exp] 99 / 4e-23 AT2G20990 850 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.010G223900 [exp] 99 / 6e-23 AT5G04220 598 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10027709 pacid=23151304 polypeptide=Lus10027709 locus=Lus10027709.g ID=Lus10027709.BGIv1.0 annot-version=v1.0 ATGGAAAAGTGGTTATTCAGTCCGATTGCCTGTGGGATTGTGGTGAGAATTCTTCTGGTTTTCGTTCTCGTCCGCTCTCAGAAGAAAGCGCGGTCCAAGC GTCCTATGAAACGCGGGAATACACTAGCGTCTTATGCGATGGTTAGCGATTTGGCCGATCCCCTGAAGCTGAATTGGCTTAATTACTTTCTCACCAAGAT TTGGCCATACGCTAATGAGGATGCTGAGATGATAAAGATGTCAGTTGAATCAACTCTTGAGGAATACAGATCCATGAAGCTATCATCTCTCAGCTTCTCT GACTTCACCCTTGGTACCGTTGCCACACAATTCACAGGTTGTGGGGTTACTATGGAGTTGGAAGTGAACTGGAATGGAAATCCAACCATACTACTTGATG TGAAGATGGCAACGCTTGCTGGTGTTACTCTGGCTGTGCAGGTGATGGATATCGAGTTTAGTGGGGTGTTTAGGTTGATATTCAAGCCCTTGAAAAAGTT GGAGTTTAAGCTTCAAGTAGTTGGAGGAGGTGACATTGGAACATCAATCCCTGGACTCTCCAGTGCCCTAGAGGAAACTATACGCAATGCCATTGAAGAC TATTACCTGGCCATGCAGGCAAAGGACCTCATTGGGGAATCAGATCCCTATGCTCTATTCTACATTAGGCCTTTACGTAACACAATACGAACAAGTGAAA TCATGAGCAATGATTCAAACCCAATCTGGAATAAGGTGTTTGAATTTGTTGTTGAGGACCAATCTACTCAGCACTTGCACGTTAAGATTTTTGATGACGA AGATTCTGAGCTACTTGGATGTGCTCAAATTCCGTTGAAGGAGCTTTTAGTTGGTGAATGGAAGTCTGAGTGGTTGAAGCTGGTTAAGGATTTGGACGAC TAA
AA sequence Show only first row Show all	>Lus10027709 pacid=23151304 polypeptide=Lus10027709 locus=Lus10027709.g ID=Lus10027709.BGIv1.0 annot-version=v1.0 MEKWLFSPIACGIVVRILLVFVLVRSQKKARSKRPMKRGNTLASYAMVSDLADPLKLNWLNYFLTKIWPYANEDAEMIKMSVESTLEEYRSMKLSSLSFS DFTLGTVATQFTGCGVTMELEVNWNGNPTILLDVKMATLAGVTLAVQVMDIEFSGVFRLIFKPLKKLEFKLQVVGGGDIGTSIPGLSSALEETIRNAIED YYLAMQAKDLIGESDPYALFYIRPLRNTIRTSEIMSNDSNPIWNKVFEFVVEDQSTQHLHVKIFDDEDSELLGCAQIPLKELLVGEWKSEWLKLVKDLDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Lus10027709 [exp]	0	1
AT5G56810			F-box/RNI-like/FBD-like domain...		Lus10020636 [exp]	8.9	0.6269
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Lus10035648 [exp]	13.9	0.6521
AT3G12720	MYB	ATMYB67, AtY53	myb domain protein 67 (.1)		Lus10038395 [exp]	19.5	0.6236
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Lus10035647 [exp]	19.9	0.6476
AT4G27290			S-locus lectin protein kinase ...		Lus10038557 [exp]	29.3	0.5950
AT4G21550	B3	HSI2-L2, VAL3	VP1/ABI3-like 3 (.1)		Lus10014169 [exp]	33.0	0.6023
					Lus10032997 [exp]	33.2	0.6054
AT4G14103			F-box/RNI-like superfamily pro...		Lus10020634 [exp]	34.2	0.5744
AT5G04347			Plant self-incompatibility pro...		Lus10016171 [exp]	35.9	0.5986
AT3G06240			F-box family protein (.1)		Lus10034007 [exp]	44.3	0.5447

Compare expression of checked genes

Lus10027709 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.