Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G34850 766 / 0 ATPAP26, PAP26 purple acid phosphatase 26 (.1) AT2G27190 548 / 0 ATPAP12 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1) AT2G16430 535 / 0 ATPAP10, PAP10 purple acid phosphatase 10 (.1.2) AT4G36350 512 / 9e-180 ATPAP25, PAP25 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 25, purple acid phosphatase 25 (.1) AT1G56360 509 / 1e-178 PAP6, ATPAP6 purple acid phosphatase 6 (.1) AT1G52940 442 / 3e-153 PAP5, ATPAP5 purple acid phosphatase 5 (.1) AT2G18130 439 / 2e-151 PAP11, ATPAP11 purple acid phosphatase 11 (.1) AT3G46120 350 / 1e-117 ATPAP19, PAP19 purple acid phosphatase 19 (.1) AT3G20500 318 / 4e-104 ATPAP18, PAP18 purple acid phosphatase 18 (.1) AT3G52810 306 / 9e-100 ATPAP21, PAP21 purple acid phosphatase 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039978 [exp] 953 / 0 AT5G34850 784 / 0.0 purple acid phosphatase 26 (.1) Lus10008054 [exp] 828 / 0 AT5G34850 774 / 0.0 purple acid phosphatase 26 (.1) Lus10028799 [exp] 536 / 0 AT2G16430 746 / 0.0 purple acid phosphatase 10 (.1.2) Lus10017484 [exp] 535 / 0 AT2G16430 748 / 0.0 purple acid phosphatase 10 (.1.2) Lus10006126 [exp] 527 / 0 AT2G27190 681 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1) Lus10041959 [exp] 523 / 0 AT2G16430 731 / 0.0 purple acid phosphatase 10 (.1.2) Lus10017485 [exp] 514 / 1e-180 AT2G16430 671 / 0.0 purple acid phosphatase 10 (.1.2) Lus10028798 [exp] 499 / 1e-174 AT2G16430 673 / 0.0 purple acid phosphatase 10 (.1.2) Lus10024299 [exp] 469 / 1e-163 AT2G27190 612 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G063700 [exp] 798 / 0 AT5G34850 798 / 0.0 purple acid phosphatase 26 (.1) Potri.018G123700 [exp] 771 / 0 AT5G34850 762 / 0.0 purple acid phosphatase 26 (.1) Potri.018G024800 [exp] 771 / 0 AT5G34850 742 / 0.0 purple acid phosphatase 26 (.1) Potri.009G121200 [exp] 553 / 0 AT2G16430 773 / 0.0 purple acid phosphatase 10 (.1.2) Potri.005G233400 [exp] 552 / 0 AT2G16430 700 / 0.0 purple acid phosphatase 10 (.1.2) Potri.002G029300 [exp] 547 / 0 AT2G16430 693 / 0.0 purple acid phosphatase 10 (.1.2) Potri.004G160100 [exp] 545 / 0 AT2G16430 779 / 0.0 purple acid phosphatase 10 (.1.2) Potri.011G138200 [exp] 313 / 2e-102 AT3G20500 696 / 0.0 purple acid phosphatase 18 (.1) Potri.001G423700 [exp] 309 / 6e-101 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1) Potri.003G030700 [exp] 288 / 1e-92 AT3G52820 607 / 0.0 purple acid phosphatase 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10027710 pacid=23151183 polypeptide=Lus10027710 locus=Lus10027710.g ID=Lus10027710.BGIv1.0 annot-version=v1.0 ATGAAGAAGCTCAATTGGTTTGGATTCTCAGCCACGTTGTTAGTGTTAATGAGTAATTATGTGGAGAATGGGAGTGCAAAGATCACAAGTAGCTTTGTCC GTTCGGTGTGGCCATCAACTGACATCCCTCTTGACAATGAAGTATTTGCAATTCCAGAGGGTCATAATGCTCCTCAACAGGTCCATATCACTCAAGGTGA CTATGAAGGGAAGGCTGTAATTATCTCATGGGTGACGCCTGATGAGCCCGGATCTAGCAAAGTTCAATACGGTAAATCTCAGAAAAACTATGTCTTGACT GCTCAAGGGACAGTGTCAAACTATACTTTCTACAAATACAAGTCTGGATACATTCACAAGTGCCTCCTTGATGGACTTGAGTATGCTACCAAGTATTATT ACAAGATCGGCGATGGTGAAGCTTCTCGCGAGTTTTGGTTTCAAACACCACCAAAGATTCATCCAGATGCTCCTTACAAGTTTGGCATAATAGGTGACCT GGGTCAGACGTACAACTCTAAATCAACCCTTGAGCACTATATGCAGAGCGGAGCAGATGCAGTGTTGTTTGTTGGAGATCTTTCATATGCAGACAGATAT CAATACAATGATGTTGGCATCCGATGGGATTCATGGGGCCGCTTTGCTGAGCAAAGTGCAGCATACCAGCCATGGATGTGGTCTGCTGGAAATCACGAAA TAGAGTATATGCCATACATGGGAGAGATTGTACCTTTCAAATCCTATCTTCAGCGGTACACTACTCCATACTTGGCTTCCAAAAGTACAAGTCCTCTTTG GTATGCCATCAAACGTGCATCTGCTCACATTATCGTACTCTCCAGTTATTCTCCTTTCGTGAAATACACTCCGCAGTGGACGTGGCTCAAGGAAGAGTTG AAGAAGGTTGACAGAGAGAAGACACCATGGCTCATTATTCTAATGCACGTCCCTATTTACAACACCAATTCTGCACATTTCATGGAGGGGGAAAGCATGC GTGCTGCTTTCGAAAAGTGGTTTGTTCGTGCCAGAGTTGATGTCATATTTGCAGGTCATGTTCATGCTTATGAAAGATCATATCGGATCTCAAACATACA GTACAACGTGTCAAGTGGGAACCCATATCCGATTCCAGACAAATCTGCTCCGGTCTACATTACTGTCGGGGATGGAGGAAATCAAGAAGGCCTTGCTGCA AGGTTCTTAGACCCTCAGCCAGATTACTCAGCGTTCAGAGAAGCCAGTTACGGTCATTCAACTTTAGAGATAAAGAATCGGACACATGCACTCTACCATT GGAATCGCAACGACAATGGCGAGAAGGTGGCAACTGATGCGTTTGTATTGCACAACCAATACTGGGCTAGCAATCTGAGACGCAGAAAACTAAAGAAGCA TCATCTAAGAAGTACCATCCAGCCAGTTACTACCAACTTCTTATTGGATTCAGAGTGA
AA sequence Show only first row Show all	>Lus10027710 pacid=23151183 polypeptide=Lus10027710 locus=Lus10027710.g ID=Lus10027710.BGIv1.0 annot-version=v1.0 MKKLNWFGFSATLLVLMSNYVENGSAKITSSFVRSVWPSTDIPLDNEVFAIPEGHNAPQQVHITQGDYEGKAVIISWVTPDEPGSSKVQYGKSQKNYVLT AQGTVSNYTFYKYKSGYIHKCLLDGLEYATKYYYKIGDGEASREFWFQTPPKIHPDAPYKFGIIGDLGQTYNSKSTLEHYMQSGADAVLFVGDLSYADRY QYNDVGIRWDSWGRFAEQSAAYQPWMWSAGNHEIEYMPYMGEIVPFKSYLQRYTTPYLASKSTSPLWYAIKRASAHIIVLSSYSPFVKYTPQWTWLKEEL KKVDREKTPWLIILMHVPIYNTNSAHFMEGESMRAAFEKWFVRARVDVIFAGHVHAYERSYRISNIQYNVSSGNPYPIPDKSAPVYITVGDGGNQEGLAA RFLDPQPDYSAFREASYGHSTLEIKNRTHALYHWNRNDNGEKVATDAFVLHNQYWASNLRRRKLKKHHLRSTIQPVTTNFLLDSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G34850		ATPAP26, PAP26	purple acid phosphatase 26 (.1...		Lus10027710 [exp]	0	1
AT1G52330			Late embryogenesis abundant (L...		Lus10037534 [exp]	6.2	0.9092
AT1G60810		ACLA-2	ATP-citrate lyase A-2 (.1)		Lus10030592 [exp]	7.8	0.9479
AT1G35830			VQ motif-containing protein (....		Lus10006941 [exp]	9.2	0.9327
AT1G76250			unknown protein		Lus10016006 [exp]	9.2	0.9264
AT1G31130			unknown protein		Lus10028643 [exp]	12.6	0.9177
AT3G59480			pfkB-like carbohydrate kinase ...		Lus10026865 [exp]	12.8	0.9405
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Lus10008227 [exp]	15.4	0.8758
AT4G27270			Quinone reductase family prote...		Lus10018401 [exp]	16.3	0.9107
AT2G16595			Translocon-associated protein ...		Lus10042391 [exp]	22.0	0.9043
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Lus10041106 [exp]	22.4	0.9319

Compare expression of checked genes

Lus10027710 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.