Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36490 714 / 0 DML1, ROS1 REPRESSOR OF SILENCING1, demeter-like 1 (.1) AT5G04560 708 / 0 DME1, DME DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) AT3G10010 581 / 0 DML2 demeter-like 2 (.1) AT4G34060 474 / 2e-145 DML3 demeter-like protein 3 (.1.2) AT4G04957 69 / 5e-14 Domain of unknown function (DUF1985) (.1) AT3G47830 73 / 2e-13 DNA glycosylase superfamily protein (.1) AT1G05900 48 / 4e-05 ATNTH2 endonuclease III 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035576 [exp] 2617 / 0 AT2G36490 832 / 0.0 REPRESSOR OF SILENCING1, demeter-like 1 (.1) Lus10014367 [exp] 1023 / 0 AT5G04560 540 / 1e-164 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Lus10023864 [exp] 702 / 0 AT5G04560 555 / 2e-170 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Lus10034120 [exp] 74 / 2e-13 AT3G47830 351 / 2e-121 DNA glycosylase superfamily protein (.1) Lus10043463 [exp] 56 / 3e-07 AT5G62570 306 / 1e-96 Calmodulin binding protein-like (.1.2) Lus10043074 [exp] 45 / 0.0006 AT4G12740 468 / 7e-161 HhH-GPD base excision DNA repair family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G116000 [exp] 788 / 0 AT2G36490 729 / 0.0 REPRESSOR OF SILENCING1, demeter-like 1 (.1) Potri.010G234400 [exp] 742 / 0 AT5G04560 1026 / 0.0 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Potri.008G025900 [exp] 726 / 0 AT5G04560 1030 / 0.0 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Potri.001G150001 [exp] 532 / 2e-162 AT5G04560 560 / 2e-171 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Potri.015G071300 [exp] 71 / 1e-12 AT3G47830 343 / 9e-119 DNA glycosylase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0198 [flax] [poplar] HHH PF00730 [flax] [poplar] HhH-GPD HhH-GPD superfamily base excision DNA repair protein
Representative CDS sequence Show only first row Show all	>Lus10027713 pacid=23156975 polypeptide=Lus10027713 locus=Lus10027713.g ID=Lus10027713.BGIv1.0 annot-version=v1.0 ATGGTTTTAAGCTCACTGTTGAATCATTTTTTGGCAGGTGGACTTACAGCTCCACAGTATGAATTCGGCTTACCTAAAGAACTCACGGGGGAGTTGTCGT GCTTAGGGAGAAGCAACCTTAGCAGCAGGTTTTTATTCACTCCGGAAACACCCCAGAAGGCCATGGAAGGAACGAGGGTCGAGGAGGGTGGAAATGAACT GTTGCATTGTCAAGAAACGGATAAACAAGCTGGCATTCTTGGCGCTGCAGATGGAAACGACACGGGAAACAACACAGTTCCCGTTCCGGACACTTCATCG ACAGTTGTAATGACACAGGAGAATCAGGCTGACACTCAGCCACGACGGAAAGCCAAGAGGAAGAAGCACATACCGAAAGTCATGGTGGATGGACGCAAGC CAAAGCCACAAAAGCCTCCGGCTGAGAAGCCTAATAATAAGAGGAAGAACAACGAGCAGCAACGAAAAGAGTCGAATGATGTGAATCAAGACTCGACTGC TAAAGCTTCGACTTCTCCACCTTTAACTGATGGAGGAACCACCACACCAAAGGAGATGCCTGACCCATTTGCCCGTAAAGAAGGCATGCCGAGGAGCAAA AGGAAGTACGCAAAGAAGAATGCAGTTCAAAATTCATCCGCAAGTAATCCGATAAACACAGTTGGGGAGGGTTCGAATCCACAAGCACCAGAGATCGTTG TTAAAGATGGCACGCCGAGGGTTAAGAGGAAGTATATTAAGAAGGATGCAGTTGGAAGCGTCTCAGCAAGTAAGCCAGCCGAAAATGCTGCCGAGATTTC TACTTCACAACCACCAAAACCAGCAGAAGCAGCCGTTCGCGGAGACTTGCCATGTAAGAGATACATGGGAGAGGACACGCCACTCCACAAGTGTCCCACG ACACCACCTAGTGAAGCGACGGAGGAATCTGCCGATTCACAAGGTCCTCCTCCTCAACCTGCGAAAAAGTCGTGTAGGAGGACGTTAGATTTTGGTTCAC AGAAACCAGAGGCCTACAATCAATCAGTATCCATCTCACTTGGAGAAGAAGTTGAAGTGAGAGTGCACAAGAGTTCCCCAGGATTTCCATACGACTTCAA CGATTATGTGGACAAAATTCTCTGGAGTTATTCAACAAAGATGGGATTTCTAGAACCAAGCATATCAGTTCCACCAAATGCTGAGTGCTCAAAGTTGAAT GCTAACTCATGCGAAGAAGACCGTGGTAAAGAAAAGGTAGGAACTTGGATGATGCAGCAAAACGACATAGCAAATGCATCGAGCAGTAGTAGGGGCCGAA CTTTGACCGAGGTGGGAGAGGCAAGTGGATCCCTGAACAGGCATCCGAATTCAGAACTAGCCAATGATTGCATGAATGTGACGGAGCCTTTCTACAGCAG TTTATCTCTACACCAGACATTCCCTTGGGAACTGATGCCACATTCCCGAGAAACTACGAGAGCAAATTGTCAAACTTCAGCAGCCTCCAACTTACCTGTA TCTCCAGCTTCTCAAATGGGCGTTCCTGCGGCCGCTGCAGCAAACATCAATCACTCGACTTTCGCTCATCCTCCTGAAACCGGACTTCCAGGGGAGACGT GCGGAGTAGCAGCATGTGGCATCCAGAATAGACAACAGAATGATAGTCCTTCAAATGAGATTGGGATGTTAACTGAAAGGAGATTCAAAGCTCCTACTCG ATTTCAGGATCTCGTCTCCGACACCAGCAACTTGCTCTGCACTGGTCATGCACAGCTGAATCGCGACAGCAGGCATATCCCGAACTTAAACGAGCCTTGT ATACCTTTGGAAACCGGTGACCAAGCAAACTTGACGGCCAAGAAAAGAAGTGCAAAGGATCCTCTAGGTAAATATGCATCCTCGAGCCCGAACGAAAAAG GCAAAGGATTAGCTTCTCCAACTTCAGCTTCTTTCGACTTGCTTTTCAATGAAATGCTTGATGTGGATGCCTTAACAAAGCAGTTAAAGCGGCTTAACCT CAATCGGAAAAGGCGGGGTAACATTGCACGCATACGGAACAACGAACTAGTTCCTTACAATCCCGGCAAACAAAAGCAGAACGCAATGGTCCTTTACAGA GGAGACGATAGGATGATGGTGCCACATGAAGAACCGATGAAAAGAAGGCGACCGCGGGCAAAGGTCGAGCTAGATCAAGAAACTCTTAGAGTATTTAATC TTCTTTTGAAGAACATAGACAGTGAAGGTGTTGATGGCACTGACGAAGAAAATTCGAAGTATTGGGAAGAACAAAGGAGTATCTTCCGTGGACGCACCGA CTCTTTTATAGCTCGGATGCATCTAGTGCAAGGGGATCGACGGTTCTCGAAATGGAAAGGATCGGTTGTGGACTCGGTAATTGGAGTTTTCCTAACGCAG AATGTCTCGGATCATCTTTCTAGTTCGGCATTTATGTCGATGGCTGCTCGTTTCCCTGCTAAGAGGCATGAGAAGCCGCGCTGGGAGGAAGAAGGAAGGC ACTCCATAGTCATCAATCCGACAGTTTCTATGCCGGATGAGGAAACCTCGAATTGGGATCATCACTTGTCCAATCAATCGGTTTCGCACCACCAGCATGA AGAAACAGAAGTAGTCCATGAATCAGTTCTCTTCTCTCAGAATTCATTTGTTTCGTCTCAGAACTCGAACTCTCCGGTCAGTCAAACGGTTGACCGGAAA GATTCGCCATCCTCCGAGACCAACTCGCAAGAGTTAGATACTTGGGACGGATCCCAACTAGTCAGCAGCTTGAATATGGGCAGTTCTTCTTTTGTCGAAC TCCTGGAGACGCCTCGATTCGGGTCTACTACCGTGCTACATCATCAGAGTCCGAACGAGTCTGACAAGACATCGAGTGTGTGTATCCAGACCGTGGGAGG AGGATCTGTTAAAGACTTGCCACAGAAGGAAGAAGTGAAAATCGTCTCGAATGGTAAAGCGGTGAAAGATATAAATGCTGCTAAGAGGAAGGCGAAGAGC AGAAGGGTTGGCGACGAGATCAGAGACGATGCTGACTGGGAAGCATTAAGAAGAACTGCTGAGCCGAATGGAAGGAAGAAGGAGAGAGCAGAGAACACAA AGGACTCGGTTGACTGGGAAGCTGTAAGGTCAGCAGATGTAAGTGAGATTGCCGAGACAATCAAAGCACGCGGGATGAACAGAGTGCTTGCAGGACGCAT CAAGGAGTTTCTTGATAAAGTGGTAAGCTATCATGCAAGCGTCGATCTTGAGTGGTTAAGAGATGTTCATCCAGATAGAGCCAAAGAGTACCTGCTGAGC TTTAACGGACTAGGGCTGAAAAGTGTGGAGTGTGTACGGCTTTTAACGCTGCATCACCTAGCTTTCCCTGTTGACACAAATGTTGGGCGAATCGCCGTCC GACTTGGATGGGTACCGCTGCAACCGCTACCCGAGTCGCTTCAGTTGCATCTACTCGAAATGTACCCTATATTGGACACGATTCAGAAGTATCTATGGCC TCGACTGTGCAAACTTGACCAGAAAACACTGTACGAATTGCATTACCAGTTGATTACGTTCGGAAAGGTTTTCTGCACGAAAAGCAAGCCGAACTGCAAT GCATGTCCCATGAGAGGAGAGTGTAGACATTTTGCCAGTGCGTTCGCAAGTGCAAGACTTTCGCTTCCGGGACCGGAGGAGAAGAGAATGGTTAACGTAT CTCAGGACCGGCCAAGTTTCACCAGCCCGGGTATGCCAGATGCTCGAAGATCTCTACTACCCCAACTAACCATATTCGAACCACCGATTCACTCATCAGA ATCTACGCCCCCATCAAACGTGACCGAACGAGAGAATCTGCAGCTTTCAGCGGTAAAATTGAGGGAGAACTGCGAGCCGATAATCGAGGAACCATCATCG CCAGAACCAGTCCGCACCACCTCCCAACATGCAATACCTGATATCGGAGATATCGAGGATCTCTTCACCCAGCCAACACCGCATGATATTGACGATGCCT TTTACGAGGATCCCGACGAGATCCCCATGATCAAGTTGAACGAAATCCCTGCAATTACGTTGAACGTACGGGAGCTCGCTCAGAATATAGCGACGTATAT AAAACAGAACATGGATCTTCACGATGGCGACATGTCGCTGGACTTGGTCGCTATGGCTACGGAGGCTACTTACATCCCTCCCCCCAAGCTCAAGAACATT AGCCGACTACGAACAGAGCACCGAGTATACGAACTTTCGGATTCGCACCCTCTTGTTGAAGGGCTGGACAAGCGAGAAGACGACGATCCATCACCGTATC TTTTTGCTATATGGACACCAGGTGAAACAGCAGACTCTATCAAACCACCTGAAAGAACATGTACCTCACAATCGCAAGACCAACTATGCGACGAAGGGAC ATGTTCCTCATGCAGCAGCTACTCGGAAGCTAGACGTCAAGTAGTTCGAGGGACCATTCTTATACCATGTCGAACAGCCATGCGAGGAAGCTTTCCCCTC AATGGAACATACTTTCAAGTGAACGAGGTATTTGCAGACCACGAGACTAGTATGAATCCAATCGAGGTGCCTCGATCGTTGCTATGGAATCTACCAAGAC GAACAGTCAACTTCGGAACATCTGTACCGACAATATTTAGGGGTTTGACGACCGACGAAATCCAACAATGTTTCTGGAGAGGATTTGTTTGCGTGAGAGG ATTTGATAGGGCGACGAGAGCGCCGCGTCCTCTGATGGCGAGACTGCACTTCCCAGCCAGCAAATTGAAGACAACAACAAAAGACAAGAAATGA
AA sequence Show only first row Show all	>Lus10027713 pacid=23156975 polypeptide=Lus10027713 locus=Lus10027713.g ID=Lus10027713.BGIv1.0 annot-version=v1.0 MVLSSLLNHFLAGGLTAPQYEFGLPKELTGELSCLGRSNLSSRFLFTPETPQKAMEGTRVEEGGNELLHCQETDKQAGILGAADGNDTGNNTVPVPDTSS TVVMTQENQADTQPRRKAKRKKHIPKVMVDGRKPKPQKPPAEKPNNKRKNNEQQRKESNDVNQDSTAKASTSPPLTDGGTTTPKEMPDPFARKEGMPRSK RKYAKKNAVQNSSASNPINTVGEGSNPQAPEIVVKDGTPRVKRKYIKKDAVGSVSASKPAENAAEISTSQPPKPAEAAVRGDLPCKRYMGEDTPLHKCPT TPPSEATEESADSQGPPPQPAKKSCRRTLDFGSQKPEAYNQSVSISLGEEVEVRVHKSSPGFPYDFNDYVDKILWSYSTKMGFLEPSISVPPNAECSKLN ANSCEEDRGKEKVGTWMMQQNDIANASSSSRGRTLTEVGEASGSLNRHPNSELANDCMNVTEPFYSSLSLHQTFPWELMPHSRETTRANCQTSAASNLPV SPASQMGVPAAAAANINHSTFAHPPETGLPGETCGVAACGIQNRQQNDSPSNEIGMLTERRFKAPTRFQDLVSDTSNLLCTGHAQLNRDSRHIPNLNEPC IPLETGDQANLTAKKRSAKDPLGKYASSSPNEKGKGLASPTSASFDLLFNEMLDVDALTKQLKRLNLNRKRRGNIARIRNNELVPYNPGKQKQNAMVLYR GDDRMMVPHEEPMKRRRPRAKVELDQETLRVFNLLLKNIDSEGVDGTDEENSKYWEEQRSIFRGRTDSFIARMHLVQGDRRFSKWKGSVVDSVIGVFLTQ NVSDHLSSSAFMSMAARFPAKRHEKPRWEEEGRHSIVINPTVSMPDEETSNWDHHLSNQSVSHHQHEETEVVHESVLFSQNSFVSSQNSNSPVSQTVDRK DSPSSETNSQELDTWDGSQLVSSLNMGSSSFVELLETPRFGSTTVLHHQSPNESDKTSSVCIQTVGGGSVKDLPQKEEVKIVSNGKAVKDINAAKRKAKS RRVGDEIRDDADWEALRRTAEPNGRKKERAENTKDSVDWEAVRSADVSEIAETIKARGMNRVLAGRIKEFLDKVVSYHASVDLEWLRDVHPDRAKEYLLS FNGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEMYPILDTIQKYLWPRLCKLDQKTLYELHYQLITFGKVFCTKSKPNCN ACPMRGECRHFASAFASARLSLPGPEEKRMVNVSQDRPSFTSPGMPDARRSLLPQLTIFEPPIHSSESTPPSNVTERENLQLSAVKLRENCEPIIEEPSS PEPVRTTSQHAIPDIGDIEDLFTQPTPHDIDDAFYEDPDEIPMIKLNEIPAITLNVRELAQNIATYIKQNMDLHDGDMSLDLVAMATEATYIPPPKLKNI SRLRTEHRVYELSDSHPLVEGLDKREDDDPSPYLFAIWTPGETADSIKPPERTCTSQSQDQLCDEGTCSSCSSYSEARRQVVRGTILIPCRTAMRGSFPL NGTYFQVNEVFADHETSMNPIEVPRSLLWNLPRRTVNFGTSVPTIFRGLTTDEIQQCFWRGFVCVRGFDRATRAPRPLMARLHFPASKLKTTTKDKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Lus10027713 [exp]	0	1
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10001714 [exp]	6.5	0.8935
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Lus10028403 [exp]	10.8	0.8962
AT1G69020			Prolyl oligopeptidase family p...		Lus10026683 [exp]	12.0	0.8539
AT5G19420			Regulator of chromosome conden...		Lus10024157 [exp]	17.3	0.8808
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Lus10009426 [exp]	18.8	0.8806
AT2G04540			Beta-ketoacyl synthase (.1)		Lus10033810 [exp]	19.4	0.8501
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Lus10041856 [exp]	20.9	0.8947
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10007206 [exp]	22.3	0.8857
AT3G11440	MYB	AtMYB65	myb domain protein 65 (.1)		Lus10036103 [exp]	24.2	0.8420
AT1G79730		ELF7	EARLY FLOWERING 7, hydroxyprol...		Lus10037558 [exp]	27.0	0.8601

Compare expression of checked genes

Lus10027713 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.