Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23620 422 / 2e-149 Ribosomal RNA processing Brix domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035575 [exp] 556 / 0 AT3G23620 449 / 4e-160 Ribosomal RNA processing Brix domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G088700 [exp] 460 / 1e-164 AT3G23620 396 / 3e-139 Ribosomal RNA processing Brix domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0458 [flax] [poplar] IIaaRS-ABD PF04427 [flax] [poplar] Brix Brix domain
Representative CDS sequence Show only first row Show all	>Lus10027714 pacid=23156877 polypeptide=Lus10027714 locus=Lus10027714.g ID=Lus10027714.BGIv1.0 annot-version=v1.0 ATGTCTATGAGGATAAAGACACCACAGAAAGGAAGAATCAGGCGGGCGCTTGAGAAGCGAGCTCCAAAGCTGGTGGAGACGGGGAAGAAGACGTTGATAC TCCAAGGCACGAAGACTAGCAATGTGTTGAATTCTGTTCTGACCGAGCTGTATCATTTGAAGAAGGATAGCGCGATAAGGTATACGCGGAAGAATGATAA CATCCGGCCTTTTGAGAGTGGGGGCGAGACTTCCCTCGAGTTCTTTTCGGAGAAAACTGATTGCAGCATTTTTGTGTATGGCAACACATCAAAGAAGCGG CCTGACAATCTTGTCATTGGACGTACCTATGATCACCATATCTATGATCTCATAGAGGTCGGTGTGGAGAATTTTAAATCCATGTCATCGTTCAAGTACG ATAAACAGCTAGCTCCAAGGAGTGGTACGAAGCCATTCATCACTTTCGTGGGTGAAGGTTTTGAGACCGTAGATGAGCTGAAACATTTGAAAGAAGTTCT GCTCGAGCTTTTCCGTGGAGAGGTAGTGGAAAATTTGAGCCTTGCTGGACTAGACAGAGCTTACGTATGCACAGCAGTGTCATCAGTGCGAGTTTGCCTT ACTCATTGTGCGGTGAGGTTGAAGAAGTCTGGTTCCGTAGTCCCGAGGATCGAACTTGTGGAAATCGGTCCTTCTATGGATTTGGTGTCCCGTCGCCATC GCCTTCCTAACGATGGCGTAATGAAAGAAGCCAAGAAAATTTCTAAAGAGACTATCAAGAAGAAGATTAAGAACGTTGTAGGAGATGCTATAGACGGCAA GGTTGGAAAGATTTACATGCCTGATCAGAAGGTTGGAGAGATACAACTGCCAAACAAAGCCAAAGGAGTAAAGAGAGAGCGGAAAGAAGCCAAGTTGAAG AAGAGCGATGAGCGTGCATCGAAGAAGCAGAAGGAAGCATCTGGCTAA
AA sequence Show only first row Show all	>Lus10027714 pacid=23156877 polypeptide=Lus10027714 locus=Lus10027714.g ID=Lus10027714.BGIv1.0 annot-version=v1.0 MSMRIKTPQKGRIRRALEKRAPKLVETGKKTLILQGTKTSNVLNSVLTELYHLKKDSAIRYTRKNDNIRPFESGGETSLEFFSEKTDCSIFVYGNTSKKR PDNLVIGRTYDHHIYDLIEVGVENFKSMSSFKYDKQLAPRSGTKPFITFVGEGFETVDELKHLKEVLLELFRGEVVENLSLAGLDRAYVCTAVSSVRVCL THCAVRLKKSGSVVPRIELVEIGPSMDLVSRRHRLPNDGVMKEAKKISKETIKKKIKNVVGDAIDGKVGKIYMPDQKVGEIQLPNKAKGVKRERKEAKLK KSDERASKKQKEASG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23620			Ribosomal RNA processing Brix ...		Lus10027714 [exp]	0	1
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10010745 [exp]	1.0	0.9159
AT1G64350		SEH1H	Transducin/WD40 repeat-like su...		Lus10003896 [exp]	1.7	0.8958
AT2G19740			Ribosomal protein L31e family ...		Lus10018032 [exp]	2.0	0.9057
AT1G26880			Ribosomal protein L34e superfa...		Lus10042199 [exp]	3.2	0.8855
AT1G76405			unknown protein		Lus10025161 [exp]	3.5	0.8721
AT5G63890		HISN8, ATHDH	HISTIDINE BIOSYNTHESIS 8, hist...		Lus10031985 [exp]	3.6	0.8490
AT2G40660			Nucleic acid-binding, OB-fold-...		Lus10034239 [exp]	4.1	0.8364
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10016992 [exp]	4.5	0.8906
AT4G18100			Ribosomal protein L32e (.1)		Lus10031699 [exp]	4.6	0.8705
AT3G54200			Late embryogenesis abundant (L...		Lus10040941 [exp]	4.7	0.8520

Compare expression of checked genes

Lus10027714 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.