Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36480 244 / 7e-68 ENTH/VHS family protein (.1.2.3) AT4G04885 191 / 5e-50 PCFS4 PCF11P-similar protein 4 (.1) AT2G36485 93 / 1e-21 ENTH/VHS family protein (.1) AT5G43620 75 / 9e-14 Pre-mRNA cleavage complex II (.1) AT1G66500 74 / 1e-13 C2H2ZnF Pre-mRNA cleavage complex II (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035573 [exp] 1773 / 0 AT2G36480 362 / 4e-110 ENTH/VHS family protein (.1.2.3) Lus10023867 [exp] 872 / 0 AT2G36480 246 / 2e-68 ENTH/VHS family protein (.1.2.3) Lus10014370 [exp] 630 / 0 AT2G36480 248 / 2e-69 ENTH/VHS family protein (.1.2.3) Lus10018357 [exp] 187 / 1e-48 AT4G04885 653 / 0.0 PCF11P-similar protein 4 (.1) Lus10007652 [exp] 183 / 4e-47 AT4G04885 343 / 1e-104 PCF11P-similar protein 4 (.1) Lus10006766 [exp] 176 / 4e-45 AT4G04885 650 / 0.0 PCF11P-similar protein 4 (.1) Lus10020058 [exp] 171 / 3e-43 AT4G04885 633 / 0.0 PCF11P-similar protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G115600 [exp] 565 / 0 AT2G36480 268 / 3e-76 ENTH/VHS family protein (.1.2.3) Potri.004G020300 [exp] 191 / 2e-49 AT4G04885 386 / 9e-120 PCF11P-similar protein 4 (.1) Potri.011G024800 [exp] 172 / 2e-43 AT4G04885 364 / 1e-111 PCF11P-similar protein 4 (.1) Potri.017G017800 [exp] 76 / 8e-14 AT4G04885 194 / 3e-53 PCF11P-similar protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF04818 [flax] [poplar] CID CID domain
Representative CDS sequence Show only first row Show all	>Lus10027715 pacid=23157014 polypeptide=Lus10027715 locus=Lus10027715.g ID=Lus10027715.BGIv1.0 annot-version=v1.0 ATGGAGAGTGTTCGCAACTCGCTCCAGAGATCAAGAGAATCGGCACCAAAGAGAGCTCGATTAGAAAAGATGACCCAACACACCCCTAGCGTTGGGGGCG GGCGTTTCGGCGAGCGGCCGACGCCGACAAGGTTGGTTAGGGCTTCCGGCGATGATGGTAACGACTTGGGTGCGTACCACCCTCAGCCATTGCAGCAGAG TCGGGAGCTGGTAAATCAGTACAAGACTGCCCTTGCGGAGCTGACGTTCAACTCCAAGCCGATCATCACTAACCTTACTATAATCGCTGGGGAGAATGTC CTTCACGCGAGAGACATTGTCGTTGTTATCTGCAAACACATTATTGAGGTTCCAAGTGAGCAGAAGCTGCCAGCACTTTATCTGCTCGACAGCATTGTGA AGAATCTTGGGATTCCGTATGCAAAACATTTTGGTCAAAGATTGACAGAGGTGTTCTGCAAGGCATATAGGCAGGTTGATCCTTCAATTCAATCCAGCAT GCGCCATCTTTTTGGAACGTGGAGAAGTGTCTTCCCTCTGCAGTTACGTCAGATGATTGAAAAGGAACTCGGATTTTCTTCTGCAGCTAATGGATCATCT ACTGGAACAATGACTTCAAGGCCCGATGCACAGTCACAGCTACCACAACATAGCATTCATGTCAATCCAAAGTACTTGGAAAGGCAGCAGCGCCTTCAAC AGTCAGTCAGGGCACCAAGAGCTGACTCACCTGATGAAACCGAAAGGTCAGAAAGATCTGCTAGCATTGTAGCTTCACGTCCTTGGACAGATTCAGCTGT TAAAGTGCGTAACATCCAACGTAATCAGAGGGCACCGCTAAGTGATTCCAGTGAAGAGAAGAGCAGAGGTGTATTATATGGGGATTTGGACTATGGTACC AATGCTTCAAGGAACTTGGGTTTGGGATCTGGGCGCATAGAAGCCAGGGGTTCTGAACAGGGACATGGGAAATCATGGTACGGAGTGGCAGGTGGTGTTC CTGAAAAGTTGTCTGACCCACGAAATGGGTACAGCATGAAGCATAGAGTGCCAGATCATCTGATTTCCAAATCAGTTAAAGCTACACATTTACAGAAAAC CGAGGGCATTGCCCACAGAAGGGATAACAACATTTCTACCAGTTGGAAAAACTCTGAGGAAGAGGAGTTCACGTGGGATATGCACTCCAGATTGCCTGAT AGAGACACGGAGAAATTGGGGATTGAAAATCGTGTAAGAAGGGCTCAAATTGCTGAGGAAGTTTTGTCTCAGTTTGATAGAGAGTCTTCCTCAGATTCAT TATCCTCCGAGCATGGCCATCTTGCTAATGGAGGGAACCATTCATCCTCACCATGGAGATGGCAAGAAGCAACCTCAATGGATGATCTAGTGTTTTCTGA TTCTGGAACTAATTCGAGTTATACAGAGGGGAAACCAGCTATGCATGGCGGATTGCCTTCTAGGGTCCTGACAGGTGCTCAAGCAGGCCCGCCTCGTGCT GCTGCCTCCGGCTTTGGGGTTGCGGCAAATGCATCGTTAAACCTCACCAGAACCAGAGCACACCCTTCACAGCAATCACCACCATGTCAAACCTTACCAA GTACCTCATTTCCGTTGCGCTATCCTCCCAGCCAACTGCCAATTTCTGCTGACGAGGAATACCAATCGGTCTTGCCTCAATCCCGATCAAAGGTTCATCC AAATACTCAGCTGCGAGATTTGAACAAATTACCACCTGCAGAATTGCGATCTTCTCCCCTGGTAAGGGTTTCTAGACAACAAGCTCAACGCTATCCTTTC TCTCATGAACAGCAGCTGGACTATGAACCATCTGAGTCTTCTGGTCCATCTCAGAAGAAAATCCTGTCCTTAAAACATAATGCTGGAGCTTCATTCCCAT CAGGACTTTCTGATTCGGACCAGTGCATTCGACATACAACGGAAGCTTCAGGCCATTCAAGCACAAGTAGTTTATTAGCAGCCGTTATGAAGAGTGGCGT TCTATCAGCTGTAACTGCTGGTGGATTGGCTAGTAAGGATTTCCAGAATAGTGGACATGTTAAATCGAAGGCAGATGCTAAACCTCCTTTTTTGAACGGG CGTCCTCCTATTCAACTATCTTCTTCCGGCTCCAGACAAGCAACTGCTTCTAAAGCGAGCCGCCCCACTTTGCATGATGTAAAGTCATCTGCCTCGGTTG TCTCCTGTAAGAAGAAAGAGCAGCAGCAGTTATCACCAGCTCCTATATCGCCATCAACAGGAACTCCAAAGTTGATAGATAAGGTATCAAACCCGATTTC AAATCTTTTGAGCTCATTACTCGTGAAAGGTCTGATAAAGTCGGAGGTCTCGCCAGTATCATCATCTGAGATGACCATTCAACGAGACACTCGGGACAAA AGTATTGTAGTTTCCAAGTCTGCACCAGTTTCTTCTCTGCCAGAACCTGCTTCCACAACGGATGAGGAATCTCTTGAAAAAACTGATGCAAGTAGCTCTA TTGATTTGTCCAAGTCTACCCTATTGAAGCCTGATGCCAAAGACTCATCTATTTTGCCTCTGCCTATCCCAGTTGAATTTGGAAGTCTTATTGGATTGCA GTTTACGTCGAATGTTATCCGAGCATTTCATCCTGCAGTCATTGACTCACTTTTTGACGATCTTCCTCGCCAGTGTAATGTATGTGGTCTTCGGCTTAAA CTTAAAGAGTTGCTTGATAAGCATTTGGAGTGGCACAGTGAAACTGAGACTGGTCCCGATGGGTTAAGAATAGGAATAAGAAGATGGTATGCACAAAAAG AGGATTGGATTTCCCCAAAGCCTAGCATTCCTTGTGTATTGGATTCGTCTGAGATGGACGGCTCTCAGAGTATAACGGATTGGGATAGCCCAATGGCTCC TGCAGATGAAGATCAATCTATATGTGTTCTATGTGGTGAGCTGTTTGAAGATTATTACAGTCCTGAAGGGAATAGGTGGATGTTTAGGGGAGCCATGCGC ATGGCACTTCTATTGGATAATGATCCACAACGAGATGAAATTAAGTCTCAGAATGATCTCCTAGTGCATTTGCGTTGTCCCTCAGAAGGTTCAGCTGATG ATCTGGGTCTGGCAAAGCATGTGAAAATGGCGATCTTTGGTGTCTCGTGCTATTCTCATCATGAACTTGCTCATTGTATGGCTGGTTTCTGGTTCGAACG TCAAATTGAAGCTGGACGGATCGTGGCTGCTTTCGTGAACACCACAATGCTGATTGGGTTGCGAAAGAGGGGATTGCAGGTCGTCTCCAACTGA
AA sequence Show only first row Show all	>Lus10027715 pacid=23157014 polypeptide=Lus10027715 locus=Lus10027715.g ID=Lus10027715.BGIv1.0 annot-version=v1.0 MESVRNSLQRSRESAPKRARLEKMTQHTPSVGGGRFGERPTPTRLVRASGDDGNDLGAYHPQPLQQSRELVNQYKTALAELTFNSKPIITNLTIIAGENV LHARDIVVVICKHIIEVPSEQKLPALYLLDSIVKNLGIPYAKHFGQRLTEVFCKAYRQVDPSIQSSMRHLFGTWRSVFPLQLRQMIEKELGFSSAANGSS TGTMTSRPDAQSQLPQHSIHVNPKYLERQQRLQQSVRAPRADSPDETERSERSASIVASRPWTDSAVKVRNIQRNQRAPLSDSSEEKSRGVLYGDLDYGT NASRNLGLGSGRIEARGSEQGHGKSWYGVAGGVPEKLSDPRNGYSMKHRVPDHLISKSVKATHLQKTEGIAHRRDNNISTSWKNSEEEEFTWDMHSRLPD RDTEKLGIENRVRRAQIAEEVLSQFDRESSSDSLSSEHGHLANGGNHSSSPWRWQEATSMDDLVFSDSGTNSSYTEGKPAMHGGLPSRVLTGAQAGPPRA AASGFGVAANASLNLTRTRAHPSQQSPPCQTLPSTSFPLRYPPSQLPISADEEYQSVLPQSRSKVHPNTQLRDLNKLPPAELRSSPLVRVSRQQAQRYPF SHEQQLDYEPSESSGPSQKKILSLKHNAGASFPSGLSDSDQCIRHTTEASGHSSTSSLLAAVMKSGVLSAVTAGGLASKDFQNSGHVKSKADAKPPFLNG RPPIQLSSSGSRQATASKASRPTLHDVKSSASVVSCKKKEQQQLSPAPISPSTGTPKLIDKVSNPISNLLSSLLVKGLIKSEVSPVSSSEMTIQRDTRDK SIVVSKSAPVSSLPEPASTTDEESLEKTDASSSIDLSKSTLLKPDAKDSSILPLPIPVEFGSLIGLQFTSNVIRAFHPAVIDSLFDDLPRQCNVCGLRLK LKELLDKHLEWHSETETGPDGLRIGIRRWYAQKEDWISPKPSIPCVLDSSEMDGSQSITDWDSPMAPADEDQSICVLCGELFEDYYSPEGNRWMFRGAMR MALLLDNDPQRDEIKSQNDLLVHLRCPSEGSADDLGLAKHVKMAIFGVSCYSHHELAHCMAGFWFERQIEAGRIVAAFVNTTMLIGLRKRGLQVVSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36480			ENTH/VHS family protein (.1.2....		Lus10027715 [exp]	0	1
AT5G16280			Tetratricopeptide repeat (TPR)...		Lus10013588 [exp]	1.0	0.9179
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10037390 [exp]	2.6	0.8750
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Lus10016788 [exp]	5.5	0.8830
AT4G33210		SLOMO	SLOW MOTION, F-box family prot...		Lus10038067 [exp]	8.5	0.8736
AT1G64570		DUO3	DUO POLLEN 3, Homeodomain-like...		Lus10002076 [exp]	9.3	0.8847
AT4G21710		NRPB2, EMB1989	EMBRYO DEFECTIVE 1989, DNA-dir...		Lus10011182 [exp]	12.5	0.8841
AT1G80070		EMB33, EMB177, ...	ABNORMAL SUSPENSOR 2, EMBRYO D...		Lus10023129 [exp]	15.5	0.8849
AT2G36480			ENTH/VHS family protein (.1.2....		Lus10023867 [exp]	16.1	0.8669
					Lus10034709 [exp]	16.9	0.8478
AT5G42400		SDG25, ATXR7	ARABIDOPSIS TRITHORAX-RELATED7...		Lus10016051 [exp]	17.4	0.8582

Compare expression of checked genes

Lus10027715 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.