Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03690 597 / 0 Aldolase superfamily protein (.1.2) AT3G52930 584 / 0 Aldolase superfamily protein (.1) AT2G36460 584 / 0 Aldolase superfamily protein (.1.2) AT4G26530 528 / 0 Aldolase superfamily protein (.1.2) AT4G26520 478 / 6e-170 Aldolase superfamily protein (.1) AT2G21330 373 / 3e-128 FBA1 fructose-bisphosphate aldolase 1 (.1.2.3) AT4G38970 372 / 1e-127 FBA2 fructose-bisphosphate aldolase 2 (.1.2) AT2G01140 371 / 1e-127 PDE345 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035571 [exp] 681 / 0 AT5G03690 604 / 0.0 Aldolase superfamily protein (.1.2) Lus10014373 [exp] 638 / 0 AT2G36460 629 / 0.0 Aldolase superfamily protein (.1.2) Lus10023870 [exp] 634 / 0 AT2G36460 630 / 0.0 Aldolase superfamily protein (.1.2) Lus10032956 [exp] 527 / 0 AT4G26530 635 / 0.0 Aldolase superfamily protein (.1.2) Lus10035473 [exp] 366 / 2e-125 AT4G38970 671 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Lus10031088 [exp] 365 / 5e-125 AT4G38970 674 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Lus10007940 [exp] 258 / 7e-84 AT2G01140 507 / 0.0 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Lus10034619 [exp] 258 / 2e-81 AT2G01140 457 / 1e-158 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Lus10005850 [exp] 229 / 4e-75 AT4G26530 261 / 4e-88 Aldolase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G090100 [exp] 601 / 0 AT3G52930 620 / 0.0 Aldolase superfamily protein (.1) Potri.006G165700 [exp] 588 / 0 AT2G36460 634 / 0.0 Aldolase superfamily protein (.1.2) Potri.001G468100 [exp] 519 / 0 AT4G26530 629 / 0.0 Aldolase superfamily protein (.1.2) Potri.011G165000 [exp] 514 / 0 AT4G26530 628 / 0.0 Aldolase superfamily protein (.1.2) Potri.007G015500 [exp] 376 / 2e-129 AT4G38970 703 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Potri.009G124100 [exp] 376 / 3e-129 AT4G38970 703 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Potri.004G162400 [exp] 374 / 1e-128 AT4G38970 704 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Potri.008G125900 [exp] 372 / 9e-128 AT2G01140 700 / 0.0 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Potri.010G117900 [exp] 365 / 5e-125 AT2G01140 697 / 0.0 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0035 [flax] [poplar] Peptidase_MH PF00274 [flax] [poplar] Glycolytic Fructose-bisphosphate aldolase class-I
Representative CDS sequence Show only first row Show all	>Lus10027717 pacid=23157018 polypeptide=Lus10027717 locus=Lus10027717.g ID=Lus10027717.BGIv1.0 annot-version=v1.0 ATGTCTTGCTACAAGGGCAAATACGCCGATGAGCTTGCTACCAATGCTGCCTACATTGGCACTCCCGGCAAGGGAATTCTCGCAGCTGATGAGTCCACTG GTACCATTGGCAAGCGTTTCGCCAGCATTAACGTTGAGAACGTTGAGGAGAACCGACGTGCTCTTCGTGAGCTCCTCTTCACTGCCCCTGGTGGCCTCCA GTATCTCAGTGGAGTCATCCTCTACGAGGAAACCCTCTACCAGAAGACCAAGTCAGGGAAGCTCTTCGTCGATGTCATGAAGGAAGGCGGTGTCCTCCCT GGCATCAAAGTCGACAAGGGCACAGTCGAGCTAGCCGGAACAAACGGCGAGACCACAACCACAGGACTCGACGGCCTAGGCCAGCGATGCGCCAAGTACT ACGAAGCAGGCGCCCGTTTCGCCAAGTGGCGAGCAGTCCTCAAAATCGGCCCCAACGAGCCATCGCAGCTAGCCATCAACGAGAACGCCAACGGTCTAGC AAGGTACGCCATCATCTGCCAGGAGAACGGCCTAGTCCCAATCGTCGAGCCCGAGATCCTCGTGGACGGCTCCCACGACATCAACAAGTGCCTCGACGTC ACTGAACGCGTCCTCGCCGCCTGCTACAAGGCCCTCAACGACCACCACGTCTTCCTGGAAGGCACCCTATTGAAACCCAACATGGTCACCCCTGGCTCCG ATGCCAAGAAGGCTTCCCCTGAAACAATTGCACAGTACACCGTCCTCGCCCTCCAGCGGACGATGCCCGCTGCAGTTCCGGCAGTGGTGTTCCTCTCTGG CGGACAGAGCGAAGAGGAGGCTACCGTCAACCTCAACGCCATGAACAAGCTACAGACGAAGAAGCCGTGGAGCTTGTCGTTCTCGTTCGGGCGTGCGCTT CAGCAGAGCACACTGAAGGCGTGGGCTGGTAAGGAGGAGAATGTGAAGAAGGCTCAGGAGGCTTTCTTGGTTAGGGCGAAGGCGAACTCGGAGGCGACTA TGGGGAAGTATAAGGGTGATGCTACGCTTGCTGAGGGCGCTTCCGAGAGCCTCCATGTTAAGGACTACAAGTACTGA
AA sequence Show only first row Show all	>Lus10027717 pacid=23157018 polypeptide=Lus10027717 locus=Lus10027717.g ID=Lus10027717.BGIv1.0 annot-version=v1.0 MSCYKGKYADELATNAAYIGTPGKGILAADESTGTIGKRFASINVENVEENRRALRELLFTAPGGLQYLSGVILYEETLYQKTKSGKLFVDVMKEGGVLP GIKVDKGTVELAGTNGETTTTGLDGLGQRCAKYYEAGARFAKWRAVLKIGPNEPSQLAINENANGLARYAIICQENGLVPIVEPEILVDGSHDINKCLDV TERVLAACYKALNDHHVFLEGTLLKPNMVTPGSDAKKASPETIAQYTVLALQRTMPAAVPAVVFLSGGQSEEEATVNLNAMNKLQTKKPWSLSFSFGRAL QQSTLKAWAGKEENVKKAQEAFLVRAKANSEATMGKYKGDATLAEGASESLHVKDYKY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52930			Aldolase superfamily protein (...		Lus10027717 [exp]	0	1
AT5G61350			Protein kinase superfamily pro...		Lus10021632 [exp]	2.8	0.8579
AT3G53620		ATPPA4	pyrophosphorylase 4 (.1)		Lus10025311 [exp]	7.1	0.8500
AT5G05250			unknown protein		Lus10030528 [exp]	8.5	0.8158
					Lus10038478 [exp]	11.5	0.8271
AT3G53620		ATPPA4	pyrophosphorylase 4 (.1)		Lus10024422 [exp]	15.5	0.8401
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Lus10020656 [exp]	17.9	0.8114
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10001419 [exp]	18.0	0.8284
AT3G52740			unknown protein		Lus10021366 [exp]	18.3	0.8237
AT1G69340			appr-1-p processing enzyme fam...		Lus10030413 [exp]	19.4	0.7580
AT1G33260			Protein kinase superfamily pro...		Lus10019741 [exp]	20.1	0.7833

Compare expression of checked genes

Lus10027717 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.