Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03680 276 / 6e-87 Trihelix PTL PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) AT3G10000 261 / 3e-82 Trihelix EDA31 embryo sac development arrest 31, Homeodomain-like superfamily protein (.1.2) AT1G76890 166 / 7e-46 Trihelix AT-GT2, GT2 Duplicated homeodomain-like superfamily protein (.2) AT1G76880 127 / 7e-32 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT1G33240 126 / 3e-31 Trihelix AT-GTL2, AT-GTL1 GT2-LIKE 1, GT-2-like 1 (.1) AT5G28300 71 / 8e-13 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT5G47660 68 / 3e-12 Trihelix Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035570 [exp] 642 / 0 AT5G03680 297 / 2e-94 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Lus10014375 [exp] 327 / 5e-108 AT5G03680 296 / 1e-93 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Lus10023872 [exp] 305 / 1e-100 AT5G03680 278 / 3e-88 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Lus10042806 [exp] 124 / 1e-30 AT1G76890 337 / 9e-108 Duplicated homeodomain-like superfamily protein (.2) Lus10018887 [exp] 123 / 4e-30 AT1G76880 451 / 1e-151 Duplicated homeodomain-like superfamily protein (.1) Lus10029778 [exp] 122 / 1e-29 AT1G76890 311 / 3e-96 Duplicated homeodomain-like superfamily protein (.2) Lus10033504 [exp] 115 / 7e-28 AT1G76890 323 / 8e-105 Duplicated homeodomain-like superfamily protein (.2) Lus10020873 [exp] 114 / 1e-27 AT1G76890 320 / 2e-103 Duplicated homeodomain-like superfamily protein (.2) Lus10028582 [exp] 96 / 6e-22 AT1G76880 219 / 2e-66 Duplicated homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G025600 [exp] 288 / 5e-92 AT5G03680 353 / 6e-115 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Potri.010G235000 [exp] 288 / 1e-91 AT5G03680 338 / 5e-109 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Potri.005G191900 [exp] 159 / 2e-44 AT1G76890 216 / 2e-64 Duplicated homeodomain-like superfamily protein (.2) Potri.011G147400 [exp] 146 / 4e-38 AT1G33240 181 / 5e-48 GT2-LIKE 1, GT-2-like 1 (.1) Potri.002G068400 [exp] 145 / 4e-38 AT1G76890 387 / 1e-127 Duplicated homeodomain-like superfamily protein (.2) Potri.001G454500 [exp] 143 / 5e-37 AT1G33240 186 / 1e-49 GT2-LIKE 1, GT-2-like 1 (.1) Potri.005G192000 [exp] 138 / 2e-35 AT1G76890 392 / 6e-130 Duplicated homeodomain-like superfamily protein (.2) Potri.001G309100 [exp] 135 / 7e-35 AT1G76880 350 / 2e-114 Duplicated homeodomain-like superfamily protein (.1) Potri.002G068600 [exp] 127 / 1e-31 AT1G76880 441 / 3e-148 Duplicated homeodomain-like superfamily protein (.1) Potri.019G010200 [exp] 123 / 9e-31 AT1G76890 219 / 1e-64 Duplicated homeodomain-like superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027718 pacid=23157087 polypeptide=Lus10027718 locus=Lus10027718.g ID=Lus10027718.BGIv1.0 annot-version=v1.0 ATGGTCGGAAGATGCGGTGACGGCGGGAGGTGGCCGAGGCAAGAGACGCTGACGTTGCTGGAGATAAGATCCAGGCTGGATCCTAAGTTCAAGGAAGCCA ACCAGAAAGGTCCCCTCTGGGACGAGGTTTCTAGGATACTATCTGAGGAGCATGGGTACCAAAGGAGTGGGAAGAAATGCAGGGAGAAGTTTGAGAATTT GTACAAGTACTACAAGAAGACCAAAGAAGGCAAAGCTGGGAGGCAAGATGGCAAGCATTACAGGTTCTTCAGGCAGCTTGAAGCTCTCTATGGCACTGAG TCGTCATCATCACTATCAACCATTAACAACAACATGCTCGTTCCGAATCCAACGGCTAATAATCCACTCCATCAAAACCAGCAAGACTCCTCCCCTTTCA TGATTGGAAACTCCTCAACTAGTGGTTTCCACCACCACCATCAGTTCCCTACTAACAACAATGTAACTCCCTCGTCGAACCAGGATGTCCACTTCTACTC CAGCCTCAGCATCTCCAACAACTCCTCCGAAATATTCGAGTCTTCCTCGTCCGAGGAAGCTGGTCAAGAGAATGATGATAACGATGACTCGATGACGAGG AGGAGAAGGAGGATGAGGAAGAGTGGTTGGAAGGGCATGATAAAAGAGTTCATCGATGCCCAGATGAGGAAGCTGATCGACAGGCAGGAGGCCTGGCTCG AGAAGCTGACGAGGACACTTGAGAGCAAGGAGAAGGAGAGGTTGGTTAGGGAGGAAGAGTGGAGGAAGCAAGAGGCCTCAAGGGTCGAAAGGGAGCAGAA GTTTTGGGCAAAGGAGAGGGCTTGGATCGAAGCTAGGGATAGTGCATTGATGGAAGCTTTAGGGAAGTTGAACAATAATGATGGAGGAGATCGTCATCAA CAAAATCAACATCAACATCAAGTGGTGAATGTGAATAGAAAGTGTTCTTCTTCATCTCTTGGTGATCATGATGAGGCTCATGATGATGAGAAGAAGAGGA AAGAAGATGAGCTTGGCAATTATGGATTCCATGGACAAGGGATGTACAATCCTGAAAGGTTGAGGATTCATGAGAACAATAATAATGGAGGGAGTAGTAG CAATAATAATAATAATGCTAACAATAATAATAATAGCAATGTGAGTGAGAGTTGTTTCAGGTTCTTGATGGGGGAAGGTGCGGAGAATAATCTGTGGGAG AATTATGGGTTGAAGCTTGCCAAAGGAGAGCATGGCAATGATCATCATCAAAACCAATGA
AA sequence Show only first row Show all	>Lus10027718 pacid=23157087 polypeptide=Lus10027718 locus=Lus10027718.g ID=Lus10027718.BGIv1.0 annot-version=v1.0 MVGRCGDGGRWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRILSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGTE SSSSLSTINNNMLVPNPTANNPLHQNQQDSSPFMIGNSSTSGFHHHHQFPTNNNVTPSSNQDVHFYSSLSISNNSSEIFESSSSEEAGQENDDNDDSMTR RRRRMRKSGWKGMIKEFIDAQMRKLIDRQEAWLEKLTRTLESKEKERLVREEEWRKQEASRVEREQKFWAKERAWIEARDSALMEALGKLNNNDGGDRHQ QNQHQHQVVNVNRKCSSSSLGDHDEAHDDEKKRKEDELGNYGFHGQGMYNPERLRIHENNNNGGSSSNNNNNANNNNNSNVSESCFRFLMGEGAENNLWE NYGLKLAKGEHGNDHHQNQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03680	Trihelix	PTL	PETAL LOSS, Duplicated homeodo...		Lus10027718 [exp]	0	1
AT5G03680	Trihelix	PTL	PETAL LOSS, Duplicated homeodo...		Lus10035570 [exp]	1.0	0.9271
AT5G10310			unknown protein		Lus10025740 [exp]	5.0	0.8212
AT4G03600			unknown protein		Lus10039834 [exp]	5.8	0.8493
AT5G28840		GME	"GDP-D-mannose 3',5'-epimerase...		Lus10001777 [exp]	6.0	0.8362
AT5G56760		SAT-52, AtSerat...	SERINE ACETYLTRANSFERASE 52, s...		Lus10008567 [exp]	6.3	0.8357
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Lus10010454 [exp]	10.4	0.7759
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Lus10003822 [exp]	12.0	0.8169
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10019652 [exp]	13.4	0.7725
AT1G05070			Protein of unknown function (D...		Lus10020038 [exp]	15.0	0.7925
					Lus10011351 [exp]	15.2	0.7813

Compare expression of checked genes

Lus10027718 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.