Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36430 394 / 4e-134 Plant protein of unknown function (DUF247) (.1) AT5G22540 241 / 1e-74 Plant protein of unknown function (DUF247) (.1) AT3G44710 242 / 2e-74 Plant protein of unknown function (DUF247) (.1) AT5G22550 239 / 1e-73 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G47200 229 / 6e-70 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G47250 226 / 2e-68 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) AT3G50170 219 / 2e-65 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50140 211 / 2e-62 Plant protein of unknown function (DUF247) (.1) AT3G47210 209 / 2e-62 Plant protein of unknown function (DUF247) (.1) AT3G50120 207 / 5e-61 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035569 [exp] 837 / 0 AT2G36430 427 / 2e-147 Plant protein of unknown function (DUF247) (.1) Lus10035568 [exp] 578 / 0 AT2G36430 502 / 4e-176 Plant protein of unknown function (DUF247) (.1) Lus10027720 [exp] 564 / 0 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1) Lus10020563 [exp] 205 / 5e-63 AT3G47250 204 / 2e-62 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) Lus10038338 [exp] 210 / 1e-62 AT4G31980 251 / 5e-76 unknown protein Lus10009871 [exp] 201 / 1e-59 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1) Lus10004516 [exp] 198 / 4e-58 AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 198 / 1e-57 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10010065 [exp] 190 / 4e-55 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G013800 [exp] 430 / 4e-148 AT2G36430 508 / 3e-179 Plant protein of unknown function (DUF247) (.1) Potri.005G116100 [exp] 427 / 4e-147 AT2G36430 511 / 4e-180 Plant protein of unknown function (DUF247) (.1) Potri.004G187100 [exp] 353 / 6e-118 AT5G22540 418 / 7e-144 Plant protein of unknown function (DUF247) (.1) Potri.004G185501 [exp] 216 / 3e-64 AT2G36430 266 / 2e-83 Plant protein of unknown function (DUF247) (.1) Potri.007G047700 [exp] 205 / 4e-60 AT3G50120 721 / 0.0 Plant protein of unknown function (DUF247) (.1) Potri.003G181600 [exp] 197 / 3e-58 AT2G36430 241 / 5e-75 Plant protein of unknown function (DUF247) (.1) Potri.010G144200 [exp] 191 / 5e-56 AT3G50140 245 / 7e-76 Plant protein of unknown function (DUF247) (.1) Potri.003G181800 [exp] 189 / 4e-55 AT2G36430 238 / 1e-73 Plant protein of unknown function (DUF247) (.1) Potri.013G146400 [exp] 191 / 6e-55 AT3G50150 238 / 3e-72 Plant protein of unknown function (DUF247) (.1) Potri.013G146700 [exp] 185 / 2e-53 AT3G50150 233 / 2e-71 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [flax] [poplar] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10027719 pacid=23156964 polypeptide=Lus10027719 locus=Lus10027719.g ID=Lus10027719.BGIv1.0 annot-version=v1.0 ATGTCAAACAACCCAGCAACACCTACCACCGTCACCGGCGGTCAAACACAATCCCATTCCCACCACCACATAATCAACATGCCGACACCAATTTCCGATC GCCTCAGACGTCTACAGGAAAGAATCTCCCAACCCCCAAAACTCCTCAAACCAACAGCCGGCCACAGCTCCTGCTGCATCTTCAGGGCACCGTCGACGTT CGTCGACATAAACGGCAAGTCGTATCAGCCTCAAGTCGTCTCCATCGGCCCATACCACCGCGGCAAACCTCACTTGGAAATGATGGAAGAGCACAAGTGG CACTACTTGGGCTCCATGCTCAACCGTATCCAACCTCATGCCAGTTTGGGAAGCCTCCTCGATTCGATATCCGGTCTCGAAGGGGACATCAGGGCTTGCT ATTCCCAGTCGATTCAGATGGGGAGCGACGAATTTGTCGAGTCGATGGTGATAGACGGCTGTTTCCTACTCGAATTATTCCGGAAAGTTTCCGGAATCGT TCCATTCGAAGATCATGATCCGATCATCTCAATGTCTTGGCTCATTTCGAACCTTTCTCGAGATTTCCTTCGACTCGAAAACCAGATCCCACTTTTTGTC CTCGAAACGCTCTTTCGTTTGACCAACAGTCAAACGAAAGAGTCCAATGCAAACATCCCTCACATCTCTCACAAATTGAGGGATGTACCGTTGTCTACGA TCCCTACATTAGCGTTAAATTTCTTTAACCACGTGTCAATGCAGAGACCGGATGAAATCATCAAAAAATGCAGGGATCTCAAGGCGAAACACTTGCTCGA CCTAGTACGATCGAGCTACACGCAATTCAAAGTCCCCTCTCCCAGGGGACGGGCCACGCACATCATCGAATGCATGTCGAGGCTCCGCATGGCAGGGATC AAGGTCAAATGGGCCCCCAAGTCGAGCAGCCTACTCGAGGTGAGGTTCGAGAGAGGTGTCCTGGAGATGCCAACGGTGACGATTGACGAGTACATGAGCT CGTTTTTGGTAAACGTCGTGGCATACGAGCAGTGCCACGTGGGATGCCAGGTAAAGCATTTCACAACGTACACGACCTTGCTGAATTCGCTGGTCAGCAG CTCGAATGACGTGGAGTATCTGCGCGATACTAACATTCTGGAGAATTATTTGGGGACGGATGATGAGGTGGCCGGGTTTCTGAATAACTTGGGGAAGGAG GTGGCGTTCGATATCAACACGTGTTACTTAGCCACGCTGTTTAACGATGTCCACCGGTATTACATGAACAGCTGGCATGTCCAGTGGTCGGCGTTCAAGT TTACTTATTTCAAGGCTGCGTTTGTGCTTTTAGTCCTTACCGTTCTGCAGACCGGTTTCACCATTTACGGTTCTTTCTAA
AA sequence Show only first row Show all	>Lus10027719 pacid=23156964 polypeptide=Lus10027719 locus=Lus10027719.g ID=Lus10027719.BGIv1.0 annot-version=v1.0 MSNNPATPTTVTGGQTQSHSHHHIINMPTPISDRLRRLQERISQPPKLLKPTAGHSSCCIFRAPSTFVDINGKSYQPQVVSIGPYHRGKPHLEMMEEHKW HYLGSMLNRIQPHASLGSLLDSISGLEGDIRACYSQSIQMGSDEFVESMVIDGCFLLELFRKVSGIVPFEDHDPIISMSWLISNLSRDFLRLENQIPLFV LETLFRLTNSQTKESNANIPHISHKLRDVPLSTIPTLALNFFNHVSMQRPDEIIKKCRDLKAKHLLDLVRSSYTQFKVPSPRGRATHIIECMSRLRMAGI KVKWAPKSSSLLEVRFERGVLEMPTVTIDEYMSSFLVNVVAYEQCHVGCQVKHFTTYTTLLNSLVSSSNDVEYLRDTNILENYLGTDDEVAGFLNNLGKE VAFDINTCYLATLFNDVHRYYMNSWHVQWSAFKFTYFKAAFVLLVLTVLQTGFTIYGSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36430			Plant protein of unknown funct...		Lus10027719 [exp]	0	1
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10026629 [exp]	1.0	0.8936
AT1G10340			Ankyrin repeat family protein ...		Lus10038609 [exp]	2.4	0.8751
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10032976 [exp]	8.0	0.8453
AT4G12010			Disease resistance protein (TI...		Lus10015350 [exp]	9.6	0.8254
					Lus10018997 [exp]	15.3	0.8673
AT3G47570			Leucine-rich repeat protein ki...		Lus10032306 [exp]	15.6	0.8587
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10026415 [exp]	17.4	0.8425
AT4G08850			Leucine-rich repeat receptor-l...		Lus10019035 [exp]	18.0	0.8287
AT4G08850			Leucine-rich repeat receptor-l...		Lus10005016 [exp]	18.1	0.8589
AT5G53110			RING/U-box superfamily protein...		Lus10007845 [exp]	18.4	0.8642

Compare expression of checked genes

Lus10027719 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.