Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36430 467 / 2e-162 Plant protein of unknown function (DUF247) (.1) AT5G22540 269 / 4e-85 Plant protein of unknown function (DUF247) (.1) AT3G47250 255 / 2e-79 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) AT3G47200 248 / 1e-76 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50170 242 / 1e-73 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G47210 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) AT3G50120 228 / 2e-68 Plant protein of unknown function (DUF247) (.1) AT3G50140 228 / 3e-68 Plant protein of unknown function (DUF247) (.1) AT3G50150 226 / 4e-68 Plant protein of unknown function (DUF247) (.1) AT3G50160 223 / 1e-66 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035568 [exp] 826 / 0 AT2G36430 502 / 4e-176 Plant protein of unknown function (DUF247) (.1) Lus10027719 [exp] 579 / 0 AT2G36430 424 / 5e-146 Plant protein of unknown function (DUF247) (.1) Lus10035569 [exp] 558 / 0 AT2G36430 427 / 2e-147 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 244 / 3e-75 AT4G31980 251 / 5e-76 unknown protein Lus10039780 [exp] 238 / 4e-73 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 234 / 9e-71 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10010065 [exp] 231 / 2e-70 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1) Lus10004516 [exp] 228 / 3e-69 AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) Lus10009871 [exp] 211 / 7e-63 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G116100 [exp] 493 / 1e-172 AT2G36430 511 / 4e-180 Plant protein of unknown function (DUF247) (.1) Potri.007G013800 [exp] 484 / 5e-169 AT2G36430 508 / 3e-179 Plant protein of unknown function (DUF247) (.1) Potri.004G187100 [exp] 403 / 4e-137 AT5G22540 418 / 7e-144 Plant protein of unknown function (DUF247) (.1) Potri.004G185501 [exp] 261 / 4e-81 AT2G36430 266 / 2e-83 Plant protein of unknown function (DUF247) (.1) Potri.007G047700 [exp] 240 / 7e-73 AT3G50120 721 / 0.0 Plant protein of unknown function (DUF247) (.1) Potri.013G146400 [exp] 221 / 6e-66 AT3G50150 238 / 3e-72 Plant protein of unknown function (DUF247) (.1) Potri.013G146700 [exp] 216 / 7e-65 AT3G50150 233 / 2e-71 Plant protein of unknown function (DUF247) (.1) Potri.001G333000 [exp] 212 / 2e-63 AT3G50160 237 / 8e-73 Plant protein of unknown function (DUF247) (.1) Potri.018G029800 [exp] 212 / 2e-63 AT4G31980 317 / 1e-101 unknown protein Potri.003G209100 [exp] 211 / 5e-63 AT4G31980 255 / 7e-78 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [flax] [poplar] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10027720 pacid=23156943 polypeptide=Lus10027720 locus=Lus10027720.g ID=Lus10027720.BGIv1.0 annot-version=v1.0 ATGTCAAACAACAACCCAATTACTGCCGCCGACGCCAGCAACGGCGGCGGAGGAGCAGAGTCCGAATCCAACCATCACACAATCAACATACATACACCGA ACTCCGATCGCATGAAACAGATGCACCAAAAAATCTCCCAACCACCAAAGCTCCTCACGCCGACAGCCGGGAAAAGGTCCTGCTCCATCTTCAGAGCACC CTCAACCTTCGTCGAAATAAACGGCAAGTCGTATCAGCCTCACATCGTCTCCATCGGCCCTTACCACCGCGGCAAGCCTCAGCTCGCCATGATCGAAGAA CACAAGTGGCGCTACTTAGGCTCCTTGCTCACCAGAATCCAATCCTCAATTAGCCTCGAAAGCCTCATCGGTTCCGTTTCCCAGCTCGAATCCGACATTC GAGCTTGCTATTCGGAGGAAATCGAGATTTCCAGCGACGAATTAGCCGAATCCATGGTGGTTGACGGATGCTTCCTGATCGAATTGTTCAGGAAAGTGGC TGGAATCGTTAGATTCGAAGATCATGATCCGATTGTGAACATGTCGTGGATCATTCCGTTCTTCTATCGTGATTTCCTCCGGCTCGAGAACCAAATCCCG TTCTTCGTGCTCGAAACCCTCTTTCGTCTGACCGAATTGGAGAAAGGGGGAAATGTAAACATCCAACACATTTTGATTCCACACCATAAGAATCGTGGAA GCTCCAACAACCGAAGCAACACCTCTAAATTTCCGTCGACGGTCTCTGCATTAGCGATCAATTTCTTCAACTATTCGATGCTGAGACCGGACGAGATCGT CGAGAAATACAAGTTCCTGAAGGCGAAACACCTCCTCGATCTGGTACGATCGAGCTACACGCAGTTCGAGGGGCAATCACCACAAATCCCTCAAGGTGGT GGACCGCCGTCGCAAATCATCCACTGCATCTCGAAGCTCCGTCGAGCTGGGATCAAGCTCCGGCCTGTTGATTCGCCCACCCTGCTACATGTAAAGTTCC ATGGAGGGATCCTCGAGATGTCCCGGATCACGATCGACGACTTCATGAGCTCATTCTTGTTCAACGTGGTGGCGTACGAGCAGTGCCACGCGGGATGCCA GGTCAAGCACTTCACCACGTATGCTACCTTGCTGGACTCGCTGGTCAACACTTCCCGAGACGTGGAGTGTTTGTGCGAAAAGAACATTTTGGAGAATTAT TTGGGGACGGAGGCTGATGTGGCGAAGTTTCTCAATAACTTGGGGAAGGAGGTGGCGTTCGATATCGACACGTGTTATTTGGCCACGGTGTTTAACGACG TGCATGAATATTACAAGAACAACTGGCACGTGACATGGGCGAGCTTTAAATCGACTTATTTTCAGACGCCGTGGTCATTTATCTCGGCTTTTGCTGCGTT TGTGCTTTTGGGGCTCACCATTTTACAGACGGTTTACACCATTTATGGTTCGTATGCCAATTAA
AA sequence Show only first row Show all	>Lus10027720 pacid=23156943 polypeptide=Lus10027720 locus=Lus10027720.g ID=Lus10027720.BGIv1.0 annot-version=v1.0 MSNNNPITAADASNGGGGAESESNHHTINIHTPNSDRMKQMHQKISQPPKLLTPTAGKRSCSIFRAPSTFVEINGKSYQPHIVSIGPYHRGKPQLAMIEE HKWRYLGSLLTRIQSSISLESLIGSVSQLESDIRACYSEEIEISSDELAESMVVDGCFLIELFRKVAGIVRFEDHDPIVNMSWIIPFFYRDFLRLENQIP FFVLETLFRLTELEKGGNVNIQHILIPHHKNRGSSNNRSNTSKFPSTVSALAINFFNYSMLRPDEIVEKYKFLKAKHLLDLVRSSYTQFEGQSPQIPQGG GPPSQIIHCISKLRRAGIKLRPVDSPTLLHVKFHGGILEMSRITIDDFMSSFLFNVVAYEQCHAGCQVKHFTTYATLLDSLVNTSRDVECLCEKNILENY LGTEADVAKFLNNLGKEVAFDIDTCYLATVFNDVHEYYKNNWHVTWASFKSTYFQTPWSFISAFAAFVLLGLTILQTVYTIYGSYAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36430			Plant protein of unknown funct...		Lus10027720 [exp]	0	1
AT3G23880			F-box and associated interacti...		Lus10023239 [exp]	1.0	0.8789
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10009053 [exp]	1.4	0.8609
AT4G12010			Disease resistance protein (TI...		Lus10015350 [exp]	3.5	0.8221
AT2G47890	CO	COL13	B-box type zinc finger protein...		Lus10040900 [exp]	4.0	0.8136
AT3G13600			calmodulin-binding family prot...		Lus10016052 [exp]	4.5	0.7815
AT1G36320			unknown protein		Lus10036666 [exp]	4.9	0.7440
AT5G66320	GATA	GATA5	GATA transcription factor 5 (....		Lus10031096 [exp]	10.9	0.7340
AT3G50910			unknown protein		Lus10041772 [exp]	13.7	0.7579
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10032976 [exp]	16.8	0.7812
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10005274 [exp]	18.5	0.7479

Compare expression of checked genes

Lus10027720 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.