Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18670 579 / 0 Ankyrin repeat family protein (.1) AT5G04700 382 / 2e-124 Ankyrin repeat family protein (.1) AT5G04680 357 / 2e-114 Ankyrin repeat family protein (.1) AT5G04690 334 / 3e-106 Ankyrin repeat family protein (.1) AT5G04730 303 / 8e-95 Ankyrin-repeat containing protein (.1) AT5G35810 231 / 3e-70 Ankyrin repeat family protein (.1) AT3G54070 209 / 1e-59 Ankyrin repeat family protein (.1) AT4G03500 81 / 1e-15 Ankyrin repeat family protein (.1) AT4G03470 58 / 1e-08 Ankyrin repeat family protein (.1) AT3G09550 58 / 1e-08 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035567 [exp] 544 / 0 AT3G18670 367 / 1e-121 Ankyrin repeat family protein (.1) Lus10019887 [exp] 431 / 9e-142 AT5G04700 359 / 3e-113 Ankyrin repeat family protein (.1) Lus10038357 [exp] 421 / 2e-138 AT3G54070 389 / 2e-126 Ankyrin repeat family protein (.1) Lus10014030 [exp] 383 / 1e-123 AT3G18670 343 / 8e-108 Ankyrin repeat family protein (.1) Lus10003282 [exp] 173 / 7e-46 AT3G18670 164 / 6e-43 Ankyrin repeat family protein (.1) Lus10019888 [exp] 167 / 4e-44 AT3G18670 116 / 2e-40 Ankyrin repeat family protein (.1) Lus10000489 [exp] 164 / 9e-44 AT3G18670 180 / 1e-49 Ankyrin repeat family protein (.1) Lus10014701 [exp] 165 / 2e-43 AT3G18670 182 / 3e-49 Ankyrin repeat family protein (.1) Lus10016672 [exp] 149 / 2e-37 AT3G18670 175 / 4e-46 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G110000 [exp] 772 / 0 AT3G18670 404 / 2e-133 Ankyrin repeat family protein (.1) Potri.005G057900 [exp] 763 / 0 AT3G18670 431 / 4e-144 Ankyrin repeat family protein (.1) Potri.008G023500 [exp] 499 / 5e-169 AT5G04700 372 / 1e-118 Ankyrin repeat family protein (.1) Potri.008G023101 [exp] 484 / 9e-163 AT5G04700 380 / 9e-122 Ankyrin repeat family protein (.1) Potri.008G022900 [exp] 482 / 4e-162 AT3G18670 399 / 4e-130 Ankyrin repeat family protein (.1) Potri.008G023700 [exp] 474 / 2e-160 AT5G04700 371 / 8e-120 Ankyrin repeat family protein (.1) Potri.015G125000 [exp] 464 / 1e-154 AT3G18670 395 / 5e-128 Ankyrin repeat family protein (.1) Potri.008G023400 [exp] 421 / 5e-142 AT5G04700 336 / 8e-109 Ankyrin repeat family protein (.1) Potri.006G062700 [exp] 368 / 3e-119 AT3G54070 334 / 2e-106 Ankyrin repeat family protein (.1) Potri.006G062900 [exp] 348 / 7e-112 AT3G18670 280 / 4e-86 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10027721 pacid=23156887 polypeptide=Lus10027721 locus=Lus10027721.g ID=Lus10027721.BGIv1.0 annot-version=v1.0 ATGAGAAACCAAACTACCAACTCAAATGCATGTCTTCCTGGATCGGCCGGCGGGTCAACGGTCAACGGCGACCCTGACTTTGTCCGCAACCTCCAGCTTT ATCGAGCCCTCGATGGCGGGGATTGGGAGACATCAAAACGCCTCCTCCACAACCATGTCGGCTCCGCCACCGCCAGTCTGTCTCCAGACGGGGACACGCC CCTTCATGTGGCGGTACTGGCGGGCCACCCGGAGATAGTGGAGGGGCTAGTGTCTGGCATTCTGCCCGGGGAGGCAATATTGATCAAGAACAAGAGCGGT GCCACGTCGCTCAACTATGCCGCCATTGGCGGGATCACGAGGATTGCAGAGTGCCTAGTGAGGCGGGCCCCAGAGCTGCTCAGGATCCCGAACCAAAACG GACACATTCCCGTGGTGGTGGCTTCGTTGTACGGCCACAAAGAGATGGTTCGGTATCTTTACCATGCTACCCCTAAAGATGAGATGGTTAGTCCCGGCGG GAGTAGGACTAATGGGGCTATGCTTCTTACTACTTGCATTGTGGATGGGCTATATGATATTGCGCTGGATTTGCTTCGATGTTATCCACAATTGGCCTTC GTTCAAGATAGTGACAAGGACACAGCTCTGGAGGTACTGGCTCGGACGCCTTCAGCGTTTCCAAGTGGAGCCCCTCTTGCCTATTGGCAATGGTGGATTT ATTCATGCATCAAAGTCCCTCGGATTTCATATGGGAACGAAGGTATTGATCATCACAGACGACCCAAAAGAAAGAGAACCCTCATTAGACAAGTGCCAGG GTTCAAGCATCTATACGACTTGAAATGGACCCACGTCCAAGCTCAAGAGCTCCTTCGCAGGCTCTGCCGAGAGCTCTCCACTCTACCGGATCATGAATTC GAGCAAACTAGCATCCATAAGGCATTGTTCGACGCCATCAGCCATGGGATCGCAGAGTTTGTCATCGAAATGATCAAACATTACCCCGATATTGTGTGGA GGGAAGACAATAACCAGAGAGGGATATTCCTCTGTGCCACACTCCACCGACAGGAGAAGATATTCAGCCTGATTTACAGGATGGGAGCTAAGAAGAACGC CATGGCTACATCTTGGGACATGAGTCACAACAATATTCTGCACCAGGCGGCGTTCCTTGCTCCGCCGTCAAGGCTCGACTGCGTCACAGGCGCCGCTCTT CAGATGCAGAGGGAGTTGCAGTGGTACAAAGAAGTGGAGAGCATAGTCCAACCGAAGCACAGAGAAATGATGAACCTGTTTCAAGACACACCGAAGACCC TCTTCACCAAAGAGCACCGAGGTCTCGTCGAAGAAGGCGAGAAGTGGATGAAGGAGACCGCCACTTCCTGCACGGTGGTCGCCGCCTTGATCGCCACCAT CATGTTCTCGGCCCTGTTCACTGTTCCCGGCGGGTTCGACCAGTACACGGGGCTGCCCGTCTTCTTGCATCGGAACTCGTTCTTGGTGTTCGTCATATGC GACGCCGTTTCGCTCTTCGCCTCCTCGTCTTCCATGCTCATGTTCCTCGGGATCCTCACTTCGCGCTACCGGGAGCAGGATTTTCTCAGGTCATTACCGA CGAAGCTGATAATCGGGCTGTCAACGTTGTTCTTCTCGATGGCGACGATGATGATCACGTTCGGAGTGTCGCTGGTGATATTCCTAAGGGATAGGTTCTC GTGGGTCACTTTTCCGATCATACTTCTAGCGAGTGTTCCGGTGACGTTGTTTGTTCTTTTACAATTCCCTCTGCTCGTTGACATTTTCTTGTCAACTTAT GGGCCTGGAATCTTTGACAGGCCCACGAAGAAGCATCGTTTCCTTTGA
AA sequence Show only first row Show all	>Lus10027721 pacid=23156887 polypeptide=Lus10027721 locus=Lus10027721.g ID=Lus10027721.BGIv1.0 annot-version=v1.0 MRNQTTNSNACLPGSAGGSTVNGDPDFVRNLQLYRALDGGDWETSKRLLHNHVGSATASLSPDGDTPLHVAVLAGHPEIVEGLVSGILPGEAILIKNKSG ATSLNYAAIGGITRIAECLVRRAPELLRIPNQNGHIPVVVASLYGHKEMVRYLYHATPKDEMVSPGGSRTNGAMLLTTCIVDGLYDIALDLLRCYPQLAF VQDSDKDTALEVLARTPSAFPSGAPLAYWQWWIYSCIKVPRISYGNEGIDHHRRPKRKRTLIRQVPGFKHLYDLKWTHVQAQELLRRLCRELSTLPDHEF EQTSIHKALFDAISHGIAEFVIEMIKHYPDIVWREDNNQRGIFLCATLHRQEKIFSLIYRMGAKKNAMATSWDMSHNNILHQAAFLAPPSRLDCVTGAAL QMQRELQWYKEVESIVQPKHREMMNLFQDTPKTLFTKEHRGLVEEGEKWMKETATSCTVVAALIATIMFSALFTVPGGFDQYTGLPVFLHRNSFLVFVIC DAVSLFASSSSMLMFLGILTSRYREQDFLRSLPTKLIIGLSTLFFSMATMMITFGVSLVIFLRDRFSWVTFPIILLASVPVTLFVLLQFPLLVDIFLSTY GPGIFDRPTKKHRFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18670			Ankyrin repeat family protein ...		Lus10027721 [exp]	0	1
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Lus10025857 [exp]	1.0	0.9744
AT1G67790			unknown protein		Lus10034566 [exp]	1.4	0.9683
AT5G36930			Disease resistance protein (TI...		Lus10007808 [exp]	2.8	0.9513
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10022305 [exp]	3.5	0.9606
AT3G25290			Auxin-responsive family protei...		Lus10021553 [exp]	4.6	0.9394
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10000548 [exp]	4.9	0.9420
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10034567 [exp]	5.5	0.9275
AT5G36930			Disease resistance protein (TI...		Lus10033953 [exp]	6.3	0.9422
AT5G17680			disease resistance protein (TI...		Lus10014829 [exp]	7.4	0.9256
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10043304 [exp]	9.4	0.9322

Compare expression of checked genes

Lus10027721 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.