Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03670 141 / 2e-36 unknown protein AT2G36420 79 / 1e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035565 [exp] 617 / 0 AT5G03670 226 / 9e-68 unknown protein Lus10023875 [exp] 203 / 9e-59 AT5G03670 231 / 2e-69 unknown protein Lus10014378 [exp] 194 / 1e-55 AT5G03670 246 / 3e-75 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G115300 [exp] 168 / 6e-46 AT5G03670 199 / 4e-57 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027723 pacid=23157080 polypeptide=Lus10027723 locus=Lus10027723.g ID=Lus10027723.BGIv1.0 annot-version=v1.0 ATGGCGCCGAAAAATAATTCCCATCACAACCAGAAGCGCTTACTACACGAGCTCCTCCAAGACGACCAGGAACCATTCCTCCTCCACGCCTACATTTCCG ACCGCCGCCGCCTAATCGTCCGAACCCGTCCCAAACCACCGCCTTCCTCCGCCGCCATCAAGAAGCGGAAACCAATCTCTCAGCATATCATCCCCCATAA CAGCAAACCCGCCAGAAGCTCCTCTTGCTTCTTCTCCTTCGCCGCCGCCGCCAGCTCCCCGGCCGCAGACCCGCGGAAGTCCCCTCTTTACTTCGGGAAA AGATCGCCACTAACCGCCAGCCCCAAAACGGCGTCGTTTCTCCTCGAAGCGGCCCTCCGAATCTCGCGCAATACGCAACCCCGTGGCGGCAGTAACAGAG GGACCGGGATTTTCGGGTCGTTGGTGAAACGGCTGACTAACGGCGGCAGGAAGAATAAGACCAAGAAAACAGACGCCGTTAAGGCGAAATCTGTTAAGGA TTGTTCTCCCGTTGACGTCGTTGGACGGAGGACGAGGTCGAAGTTGTCGCCGTCGACTTTAAGTGGGCCTAGTTGGACGGAGAGTAGTAGCAGCTTATCT GATGATGAGGATGAGTTCGATAATGAAATGTTCGAGTTCGCAGTTTACGAAGACAAGCGTTACTGTGACAGTCCTTTCCATTTCGTGCTTCAGCCGCATG ATGGTAGCCGGACTCCGGATTTCTCGTCGCCGGCCGCCTCTCCTATCCGCCTCAAAGCAGAGGGGAATGAGAATAACAAGGATGGTGAAAGCTTGAAGAA GTGCCAAATACAGAAACAACAATCGAAAACTGATGACGCTGATGCCGAAGAGAAAGAGCAATGTAGCCCAGTTTCAGTATTGGACCCACCGTTCGATGAT GAAGAAGATGACGATCCGACGGAGGACGGCGGTTTTGATGATATGGACTGCAGCTTCGCGTTTGTACAGAGAACAAAGCAACACTTGCTGCACAAGCTCT GCAGATTTGAGAAGCTCGCGGAGCTTGATCCAATCGAGCTGGAAAAGCTCATGCTCGACCACGAGCAAGAAGGAGAAGAAGAAACTACTACAACTACGGA GCGAAAGAGGAGCCACGACATTGAGGAATTCGTGATGAATGAGCTCAGCGCTTCGAGCTTCCAATGTTCGAGGAATAACAAGATCCCACGAGACATGAAG ATGTTGGTCTCTGACCTCATCGACGAGGAAGAAAGCTATCGGCAAGAAACTCACCAGAGCCACAACGACGCTATAAAAGGTCATCAAGTGGTGGCGAAAA GGGTGTGCAAGAGGTTCGAGTCATGGAAGGAAGTCGAATCGAACACGATCGACATGATGGTGGAGCAGGACTTCGACCGGTCACAAGGCGAGTGGAGAAG GAAGCAAGATGGAGTGGATGGCATTGCCATGGATATTGAAGTTGCCATCTTTGGCTTGTTGGTTGAAGAGTTATCAGAGGAGTCTCTGAAGGGTTGA
AA sequence Show only first row Show all	>Lus10027723 pacid=23157080 polypeptide=Lus10027723 locus=Lus10027723.g ID=Lus10027723.BGIv1.0 annot-version=v1.0 MAPKNNSHHNQKRLLHELLQDDQEPFLLHAYISDRRRLIVRTRPKPPPSSAAIKKRKPISQHIIPHNSKPARSSSCFFSFAAAASSPAADPRKSPLYFGK RSPLTASPKTASFLLEAALRISRNTQPRGGSNRGTGIFGSLVKRLTNGGRKNKTKKTDAVKAKSVKDCSPVDVVGRRTRSKLSPSTLSGPSWTESSSSLS DDEDEFDNEMFEFAVYEDKRYCDSPFHFVLQPHDGSRTPDFSSPAASPIRLKAEGNENNKDGESLKKCQIQKQQSKTDDADAEEKEQCSPVSVLDPPFDD EEDDDPTEDGGFDDMDCSFAFVQRTKQHLLHKLCRFEKLAELDPIELEKLMLDHEQEGEEETTTTTERKRSHDIEEFVMNELSASSFQCSRNNKIPRDMK MLVSDLIDEEESYRQETHQSHNDAIKGHQVVAKRVCKRFESWKEVESNTIDMMVEQDFDRSQGEWRRKQDGVDGIAMDIEVAIFGLLVEELSEESLKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03670			unknown protein		Lus10027723 [exp]	0	1
AT1G65700			Small nuclear ribonucleoprotei...		Lus10028183 [exp]	2.4	0.8303
AT1G63470	AT-hook		AT hook motif DNA-binding fami...		Lus10008535 [exp]	6.1	0.8776
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10006234 [exp]	9.4	0.8169
AT1G62520			unknown protein		Lus10032250 [exp]	9.7	0.7295
AT3G24150			unknown protein		Lus10019404 [exp]	11.4	0.8072
AT4G00850		GIF3	GRF1-interacting factor 3 (.1)		Lus10032892 [exp]	12.7	0.8140
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10018413 [exp]	14.7	0.7774
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Lus10018924 [exp]	15.0	0.7976
AT5G48450		SKS3	SKU5 similar 3 (.1)		Lus10038239 [exp]	15.5	0.8106
AT1G13790		FDM4	factor of DNA methylation 4, X...		Lus10032933 [exp]	18.4	0.7956

Compare expression of checked genes

Lus10027723 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.